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MicroHapulator
Tools for empirical microhaplotype calling, forensic interpretation, and simulation.
https://microhapulator.readthedocs.io/
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Add different colors to report plots
#139
standage
closed
2 years ago
0
HTML report color scheme
#138
standage
closed
2 years ago
0
Conditional plotting of read length histograms
#137
standage
closed
2 years ago
0
Haplotype call plots
#136
standage
closed
2 years ago
0
Draft: expose threshold parameters, produce interoperable profiles
#135
standage
closed
2 years ago
0
Add support for custom targets in `mhpl8r pipe`
#134
standage
opened
2 years ago
0
Diagnostic messages
#133
standage
opened
2 years ago
0
Update documentation
#132
standage
closed
2 years ago
0
Tweak plots
#131
standage
closed
2 years ago
0
Add `mhpl8r getrefr` command
#130
standage
closed
2 years ago
3
End-to-end microhap analysis pipeline
#129
standage
closed
2 years ago
6
Plot read length distribution
#128
standage
closed
2 years ago
0
New typing_rate method for TypingResult class
#127
standage
closed
2 years ago
1
New API function / class method to compute aggregate and per-marker typing rate
#126
standage
closed
2 years ago
1
New API function to compute and plot read length distribution
#125
standage
closed
2 years ago
1
New command to grab hg38
#124
standage
closed
2 years ago
0
Bugfix: markers with no valid reads (no coverage)
#123
standage
closed
2 years ago
0
Heterozygote balance
#122
standage
closed
2 years ago
3
Improvements to QA/QC for interlocus balance
#121
standage
closed
2 years ago
2
Full analysis pipeline
#120
standage
closed
2 years ago
1
Interlocus balance and heterzygote balance
#119
standage
closed
2 years ago
0
Add --reference flag for filter command
#118
standage
opened
2 years ago
0
Fill out documentation
#117
standage
closed
2 years ago
2
Measure off-target alignment
#116
standage
closed
2 years ago
0
Command to convert typing results to EFM/LRMix compatible formats
#115
standage
closed
2 years ago
0
Improve haplotype filtering / genotype calling
#114
standage
closed
2 years ago
0
Add new `filter` subcommand
#113
standage
closed
2 years ago
0
Maximize compatibility with LRMix/EuroForMix
#112
standage
closed
2 years ago
0
Moving filtering to a dedicated subcommand
#111
standage
closed
2 years ago
0
Update binder demo
#110
standage
closed
2 years ago
0
Terminology update: "allele" to "haplotype", "allele_counts" to "typing_result"
#109
standage
closed
2 years ago
0
Mark notebooks as linguist-documentation
#108
standage
closed
2 years ago
0
Fill out API docstrings and CLI descriptions
#107
standage
closed
2 years ago
2
Add API and CLI docs
#106
standage
closed
2 years ago
0
Add USC panel demo, update config docs
#105
standage
closed
2 years ago
0
Add Yale 90-plex and USC panel as example data
#104
standage
closed
2 years ago
0
Add API and CLI documentation to docs/
#103
standage
closed
2 years ago
0
Update config manual to reflect MicroHapDB updates
#102
standage
closed
2 years ago
0
Rough draft of user manual
#101
standage
closed
2 years ago
0
Excise plog, logfile, and tee
#100
standage
closed
2 years ago
0
Update "ObservedProfile" terminology
#99
standage
closed
2 years ago
0
Refactor API and CLI
#98
standage
closed
2 years ago
0
Pin minimum dependency versions
#97
standage
closed
2 years ago
0
Update Python headers
#96
standage
closed
2 years ago
0
InferredGenotype --> TypingResult
#95
standage
closed
2 years ago
0
Refactor Python API and CLI
#94
standage
closed
2 years ago
0
Decoupling MicroHapulator from MicroHapDB
#93
standage
closed
2 years ago
0
Format code with Black
#92
standage
closed
2 years ago
0
Update copyright/license headers
#91
standage
closed
2 years ago
0
Declare runtime and dev dependencies in .yml files
#90
standage
closed
2 years ago
0
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