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bioforensics
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MicroHapulator
Tools for empirical microhaplotype calling, forensic interpretation, and simulation.
https://microhapulator.readthedocs.io/
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Black auto-formatting
#89
standage
closed
2 years ago
0
Decouple from MicroHapDB
#88
standage
closed
2 years ago
0
Extend max depth threshold
#87
standage
closed
3 years ago
0
Corrected RMP implementation, notebook for ancestry inference on simulated profiles
#86
standage
closed
3 years ago
0
New module for plotting interlocus balance
#85
standage
closed
3 years ago
1
Fix divide by zero bug
#84
standage
closed
3 years ago
0
Update typing thresholds and parameters
#83
standage
closed
3 years ago
0
Simplify `mhpl8r type`
#82
standage
closed
3 years ago
0
Migrate CI
#81
standage
closed
3 years ago
0
Spruce up `mhpl8r seq`
#80
standage
closed
3 years ago
1
Migrate CI to Github actions
#79
standage
closed
3 years ago
0
BAM auto-indexing and test suite updates
#78
standage
closed
3 years ago
3
RMP implementation
#77
standage
closed
3 years ago
0
Auto-index BAM files
#76
standage
closed
3 years ago
0
Fix mhpl8r diff command
#75
standage
closed
4 years ago
1
Notebook for panel design
#74
standage
closed
4 years ago
1
Paired end read support
#73
standage
closed
2 years ago
1
Update mybinder links
#72
standage
closed
2 years ago
0
Hide threads option, fix Fastq header bug
#71
standage
closed
5 years ago
1
Fix contrib API
#70
standage
closed
5 years ago
1
Update mybinder demos
#69
standage
closed
5 years ago
1
Panel file and pop resolve
#68
standage
closed
5 years ago
1
Excise LocusContext class
#67
standage
closed
5 years ago
1
Accommodate new MicroHapDB update
#66
standage
closed
5 years ago
1
Implement `mhpl8r marker` view
#65
standage
closed
5 years ago
1
Revisit terminology
#64
standage
closed
5 years ago
1
Include assessment of mixture genotyping accuracy
#63
standage
closed
2 years ago
0
Investigate lower coverage threshold for accurate genotyping
#62
standage
closed
2 years ago
1
Update threshold for genotyping
#61
standage
closed
5 years ago
1
Fix bug with diff module
#60
standage
closed
5 years ago
1
Update sample matching notebook using 50 loci
#59
standage
closed
5 years ago
1
New diff module
#58
standage
closed
5 years ago
1
Fix self comparison bug
#57
standage
closed
5 years ago
1
Fix USA panel
#56
standage
closed
5 years ago
1
Adjustments to USA 8k simulations
#55
standage
closed
5 years ago
1
Implement `mhpl8r diff` operation
#54
standage
closed
5 years ago
0
Update expected error tests
#53
standage
closed
5 years ago
1
Error strings accessed differently in pytest 5.x
#52
standage
closed
5 years ago
1
Dynamic cutoff calculation for genotyping
#51
standage
closed
5 years ago
1
Snakemake workflow for USA 8k mock population
#50
standage
closed
5 years ago
2
Check discarded reads for compatibility with called genotypes
#49
standage
opened
5 years ago
0
Update usa8k simulation code
#48
standage
closed
5 years ago
1
New "unite" function/command
#47
standage
closed
5 years ago
1
Refactor/sim
#46
standage
closed
5 years ago
1
Refactor genotype simulation and sequencing code
#45
standage
closed
5 years ago
1
Skip simulation step for `sim` or `mixture` with precomputed JSON genotype
#44
standage
closed
5 years ago
1
New `prob` module
#43
standage
closed
5 years ago
1
New module for "mating" two genotypes to simulate a child
#42
standage
closed
5 years ago
0
Implement new `contain` module
#41
standage
closed
5 years ago
1
New `contain` module
#40
standage
closed
5 years ago
0
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