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bioforensics
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pytaxonkit
Python bindings for the TaxonKit library
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Fix test suite
#37
standage
closed
1 month ago
0
Update versioneer
#36
standage
closed
5 months ago
0
Add --keep-invalid Flag for LCA
#35
RyanBerger98
closed
6 months ago
0
Installation without conda
#34
jenniferlu717
opened
6 months ago
3
Error: Error processing taxonomic ID 59201: 17:51:07.885 [ERRO] open C:\Users\krist\AppData\Local\Temp\tmprg7jjz1s-lineage.txt: The process cannot access the file because it is being used by another process.
#33
kristinebraun
closed
6 months ago
2
Resolve Missing Taxids in LCA
#32
RyanBerger98
closed
6 months ago
0
citation?
#31
wwood
closed
6 months ago
3
Updated routine tests that failed for May 2023
#30
danejo3
closed
1 year ago
1
Update test suite for taxonomy
#29
standage
closed
1 year ago
0
Update test suite: bacteroidetes --> bacteroidota
#28
standage
closed
1 year ago
1
Switch style check to Black, prep for 0.8 release
#27
standage
closed
2 years ago
0
Fix bug with pytaxonkit.name
#26
standage
closed
2 years ago
4
Bug with taxonomy IDs < 10 not returning names
#25
philippbayer
closed
2 years ago
3
Replace Solenopsis in test suite
#24
standage
closed
2 years ago
0
Monthly update to accommodate changes to taxonomy db
#23
standage
closed
2 years ago
0
Bug fixes
#22
standage
closed
2 years ago
0
Monthly minor test suite update
#21
standage
closed
2 years ago
0
Fix list_ranks
#20
standage
closed
2 years ago
0
Handle empty inputs gracefully
#19
standage
closed
2 years ago
1
Bug: should not attempt to run taxonkit with empty input
#18
standage
closed
2 years ago
0
Changes inspired by recent update to NCBI taxonomy DB
#17
standage
closed
2 years ago
0
Update/acinetobacter
#16
standage
closed
2 years ago
0
Fix num ranks
#15
standage
closed
3 years ago
0
Update `list` doctest
#14
standage
closed
3 years ago
0
Fix doctest
#13
standage
closed
3 years ago
0
Update test suite for new taxonomy database summary stats
#12
standage
closed
3 years ago
1
Troubleshoot CI
#11
standage
closed
3 years ago
0
Update README and CHANGELOG for new release
#10
standage
closed
3 years ago
0
Accommodate minor update to taxonomy
#9
standage
closed
3 years ago
0
Update filter & lineage/refilter funcs to support updates in TaxonKit 0.7.2
#8
standage
closed
3 years ago
1
Run CI build on a monthly cron
#7
standage
closed
3 years ago
0
Add support for prefixes with taxonkit lineage/reformat
#6
standage
closed
3 years ago
0
Adding support for new "taxonkit lca" command
#5
standage
closed
3 years ago
0
Adding support for new "taxonkit filter" command
#4
standage
closed
3 years ago
6
Add support for TaxonKit 0.7
#3
standage
closed
3 years ago
0
Support for taxonkit 0.6.1, including new "name" function
#2
standage
closed
3 years ago
0
Troubleshoot CI
#1
standage
closed
4 years ago
0