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PlasmidSeeker
A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
BSD 3-Clause "New" or "Revised" License
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nothing found on a metagenome search?
#29
Sung-hub
opened
1 hour ago
0
Issue with "names.txt missing! at plasmidseeker.pl line 264."
#28
RightCake1
opened
1 year ago
2
results explanation and report
#27
aslangabriel
opened
2 years ago
0
multiple hits for plasmid description in NCBI
#26
waalkes
opened
2 years ago
2
Error: Creating the wordmap failed! Died at plasmidseeker.pl line 156
#25
ABMolBio
closed
2 years ago
5
Plasmid names file .../PlasmidSeeker-master/PlasmidSeeker_DB/db_w20_fna/names.txt missing! at plasmidseeker.pl line 264.
#24
ilkaybuysal
opened
3 years ago
5
GIves error about GenomeTester4/glistmaker exists but it's a binary file so i cant see what's in it.
#23
ilkaybuysal
closed
3 years ago
3
Deciding -b [close reference bacterium FASTA file]
#22
ilkaybuysal
closed
3 years ago
2
-i [your WGS sample FASTQ file], is it paired or unpaired fastq file?
#21
ilkaybuysal
closed
3 years ago
4
Test
#20
NetPunyawee
closed
4 years ago
0
gt4_wordmap_new: invalid file size (1048576, should be 1429612) Error: Creating the wordmap failed!
#19
Galib009
closed
4 years ago
1
compressed gz file support
#18
LeonardosMageiros
closed
4 years ago
1
Plasmid Seeker interpretation?
#17
el-nino-007
closed
4 years ago
1
how can I obtain the fasta file sequence for the 8514 plasmid ?
#16
kjestradag
closed
5 years ago
4
there is some way to get the reads that belong to the plasmids..
#15
kjestradag
closed
5 years ago
1
Clarification on the reference strain used
#14
LeonardosMageiros
closed
4 years ago
4
Created file management and dynamic dep paths
#13
mihkelvaher
closed
5 years ago
0
Execute plasmidseeker in multiple input files - output folder flag
#12
LeonardosMageiros
closed
5 years ago
6
PlasmidSeeker v1.1.0
#11
mihkelvaher
closed
5 years ago
0
High P value plasmids clarification
#10
LeonardosMageiros
closed
5 years ago
14
Cannot open GenomeTester binaries
#9
pavlo888
closed
5 years ago
1
Paired-end reads?
#8
apredeus
closed
5 years ago
1
Please add release tags
#7
tillea
closed
5 years ago
2
Error with gt4_wordmap_new
#6
nickp60
closed
5 years ago
7
Can't exec "GenomeTester4/glistmaker":
#5
SK-N-BE
closed
5 years ago
1
cannot execute binary file
#4
nonghor
closed
5 years ago
3
Plasmid present in database?
#3
SK-N-BE
closed
6 years ago
5
#! /usr/bin/perl line not present
#2
Shabhonam
closed
6 years ago
1
Illegal division by zero at plasmidseeker.pl line 409
#1
danknight
closed
6 years ago
7