bioinfologics w2rap-contigger issues

bioinfologics / w2rap-contigger

An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.

http://bioinfologics.github.io/the-w2rap-contigger/

MIT License

44 stars 14 forks source link

issues

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step2 crashed

#56 yuzhenpeng opened 2 years ago
0
help with compiling on Mac OS

#51 devonorourke opened 3 years ago
0
Step 3 crash

#50 mlcossette9224 closed 3 years ago
1
No error message (34045 Aborted)

#49 sarah872 closed 3 years ago
2
More details on w2rap-contigger step 5 needed - run with 100bp PE short reads (Illumina)

#48 wul88 opened 4 years ago
1
Can w2rap-contigger use for non-PCR-free NGS assembling?

#47 xiekunwhy closed 3 years ago
1
Segmentation fault in Step 5

#46 theaidenlab opened 4 years ago
1
Installation error

#45 vtrinca opened 4 years ago
6
Read lengths and large K

#44 andreaswallberg closed 3 years ago
1
Segfault during Step 6: removing small components

#43 melop closed 5 years ago
7
w2rap-contigger memory issues / advices to run w2rap

#42 AMMMachado closed 5 years ago
9
errors when compiling with gcc-8 in MacOS

#41 bjclavijo opened 5 years ago
1
Resume checkpoints in w2rap-contigger?

#40 mht85 closed 5 years ago
2
Having trouble with preoccupied kmers

#39 gitcruz opened 5 years ago
7
Check step2 counting using large number of batches

#38 ljyanesm closed 6 years ago
0
denoising Illumina reads

#37 mictadlo closed 5 years ago
1
K parameter determination

#36 mictadlo closed 5 years ago
5
Step 3 crashed

#35 yloemie closed 5 years ago
1
Illegal involution value

#34 sanjitsbatra opened 6 years ago
3
Step 1 Speed for w2rap contigger

#33 sanjitsbatra closed 6 years ago
3
Speeding up loading reads into memory

#32 sanjitsbatra closed 7 years ago
2
fails to compile with gcc 7.2.0

#31 wookietreiber opened 7 years ago
2
adds make install target

#30 wookietreiber closed 7 years ago
1
add `make install` target

#29 wookietreiber closed 7 years ago
0
Make error: omp_get_proc_bind

#28 sanjitsbatra closed 7 years ago
1
Not enough memory

#27 jcgrenier closed 5 years ago
16
added abyss usage instructions to command line

#26 barrk closed 7 years ago
1
added abyss usage instructions to command line

#25 barrk closed 7 years ago
0
w2rap-contiger with 150bp pe library

#24 StephanHolgerD closed 5 years ago
15
Terminate: quality score larger than 63

#23 Timothy-WANG closed 5 years ago
2
incomplete record

#22 jdmontenegro closed 6 years ago
3
Minor compatibility changes

#21 ljyanesm closed 7 years ago
0
Compiling with Intel Compiler Suite

#20 ljyanesm closed 7 years ago
0
hbv2gfa segmentation fault

#19 ethering closed 5 years ago
2
Consider enabling disk batches by default

#18 bjclavijo opened 8 years ago
1
Eliminate all data exchange via disk-files in the later stages

#17 bjclavijo opened 8 years ago
1
Rename output files to meaningful names

#16 bjclavijo opened 8 years ago
0
Dump final HBV, paths and GFAs consistently

#15 bjclavijo opened 8 years ago
2
Provide a minimum consistent set of options for PathFinder, and enable PathFinder by default

#14 bjclavijo opened 8 years ago
0
Update licensing information

#13 bjclavijo opened 8 years ago
0
Improve CLI log

#12 bjclavijo opened 8 years ago
0
Review and clean up CLI options

#11 bjclavijo opened 8 years ago
0
Undefined reference to `std::__throw_logic_error(char const*)'

#10 rrlove closed 8 years ago
3
CMake update & Performance improvement

#9 ljyanesm closed 8 years ago
0
Output the contig overlap graph in GFA format

#8 sjackman closed 5 years ago
4
Fails to build with clang on Mac OS

#7 sjackman closed 8 years ago
2
Please tag a stable release

#6 sjackman opened 8 years ago
9
Some trouble with CP_MAX_QDIFF value !

#5 Arno75 closed 8 years ago
11
cannot find -llib

#4 stsmall closed 8 years ago
4
Reduction sum for nKmers

#3 ljyanesm closed 8 years ago
0