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bionode
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bionode-watermill
💧Bionode-Watermill: A (Not Yet Streaming) Workflow Engine
https://bionode.gitbooks.io/bionode-watermill/content/
MIT License
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Common Workflow Language (CWL) support?
#45
olgabot
opened
7 years ago
5
flag to allow input resolution to fallback to cwd
#44
thejmazz
opened
7 years ago
1
better logs when input is not resolved
#43
thejmazz
opened
7 years ago
0
Custom file validator over output object
#42
thejmazz
opened
7 years ago
0
Catch Operation Finish
#41
thejmazz
closed
7 years ago
2
v0.2.x
#40
thejmazz
closed
7 years ago
2
json schema validator on input, output, action stream
#39
thejmazz
opened
7 years ago
1
Port task into redux actions
#38
thejmazz
closed
7 years ago
0
Trinity Pipeline
#37
thejmazz
opened
7 years ago
0
Parallelize BAM chunks
#36
thejmazz
opened
7 years ago
1
Resolve input from all tasks in join
#35
thejmazz
closed
7 years ago
3
Improve resolution of passed input
#34
thejmazz
closed
7 years ago
1
{ value: foo } type to just foo
#33
thejmazz
closed
7 years ago
1
integrate once where applicable
#32
thejmazz
closed
7 years ago
0
Basic CLI
#31
thejmazz
opened
7 years ago
2
Example Pipelines
#30
thejmazz
closed
6 years ago
0
Advanced genomic vcf workflow
#29
thejmazz
opened
8 years ago
0
Basic genomic vcf workflow
#28
thejmazz
closed
7 years ago
0
Test Reentrancy
#27
thejmazz
opened
8 years ago
0
tee stream to file
#26
thejmazz
opened
8 years ago
0
resume option globally and per task
#25
thejmazz
closed
7 years ago
0
force rerun of all/specific task
#24
thejmazz
closed
7 years ago
1
file timestamp or checksum
#23
thejmazz
closed
7 years ago
0
File Validation
#22
thejmazz
closed
6 years ago
1
pass in custom validator functions
#21
thejmazz
closed
7 years ago
0
null check validation
#20
thejmazz
closed
8 years ago
0
file existence validation
#19
thejmazz
closed
8 years ago
0
Unit tests for task orchestration
#18
thejmazz
closed
6 years ago
0
stream search results, filter down to IDs, run pipeline on each ID
#17
thejmazz
opened
8 years ago
0
complex join, parallels, forking
#16
thejmazz
closed
6 years ago
2
transform task
#15
thejmazz
opened
8 years ago
0
simple forking
#14
thejmazz
closed
6 years ago
1
joins and parallels composability
#13
thejmazz
closed
7 years ago
0
simple parallels
#12
thejmazz
closed
8 years ago
0
simple joins
#11
thejmazz
closed
8 years ago
0
resolution scenarios (previous task vs fs)
#10
thejmazz
closed
7 years ago
0
Check if outputted file is not null by default
#9
thejmazz
closed
8 years ago
1
Generalize traverse for resolving functions
#8
thejmazz
closed
8 years ago
0
Types
#7
thejmazz
closed
8 years ago
3
Refactor out custom classes into vanilla objs
#6
thejmazz
closed
8 years ago
1
Passing output from last task into new task
#5
thejmazz
closed
8 years ago
4
Async vs Sync Task creation
#4
thejmazz
closed
7 years ago
2
Prevent Interference with Task Streams
#3
thejmazz
closed
8 years ago
0
Timeline
#2
thejmazz
closed
7 years ago
3
Task Architecture
#1
thejmazz
closed
8 years ago
5
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