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bittremieux
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spectrum_utils
Python package for efficient mass spectrometry data processing and visualization
https://spectrum-utils.readthedocs.io/
Apache License 2.0
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Cross-link spectra annotation
#69
jstrobaek
opened
1 month ago
1
Fix continuous integration
#68
bittremieux
closed
2 months ago
1
Lark-Cython for faster grammar parsing
#67
bittremieux
opened
2 months ago
0
Fix linting
#66
bittremieux
closed
2 months ago
0
Replace appdirs by platformdirs
#65
bittremieux
closed
2 months ago
1
Update XLMOD location
#64
bittremieux
closed
2 months ago
1
Update XLMOD location
#63
bittremieux
closed
2 months ago
0
Deprecated dependency
#62
jspaezp
closed
2 months ago
0
Speedup of peptide parsing and annotation
#61
jspaezp
closed
2 months ago
2
Annotating modified lysine Immonium NH3 neutral loss
#60
HijaziHassan
closed
4 months ago
4
Get a less rounded mz_delta value in ppm for annotations?
#59
levitsky
opened
4 months ago
1
annotate using custom fragment list
#58
samcphee
closed
2 months ago
3
Can't successfully plot an annotated spectrum
#57
wsnoble
closed
7 months ago
1
Manual fragment annotation (in version 0.4.2)
#56
ch4perone
closed
8 months ago
2
Matplotlib Version
#55
mwang87
closed
2 months ago
2
ValueError: Unknown precursor m/z from USI. Specify the precursor m/z directly.
#54
chinmayaNK22
closed
10 months ago
2
function: noise peak removal
#53
danyunghsu
closed
2 months ago
1
Update GNPS USI resolver to GNPS2
#52
bittremieux
closed
2 months ago
2
'MsmsSpectrumJit' object has no attribute 'annotate_proforma'
#51
danyunghsu
closed
10 months ago
2
Correctly set version
#50
bittremieux
closed
1 year ago
1
URL-encode USIs
#49
bittremieux
closed
1 year ago
1
Update publication information
#48
bittremieux
closed
1 year ago
0
Compatible with Python 3.11
#47
bittremieux
closed
1 year ago
1
Add functionality for plotting mass errors
#46
RalfG
closed
1 year ago
2
Fix annotation of fragments with isotopic peaks
#45
issararab
opened
1 year ago
0
Unable to install in python 3.11
#44
irleader
closed
1 year ago
1
Urlencode USI
#43
bittremieux
closed
1 year ago
0
[Bug] Unpinned matplotlib version leads to unexpected results
#42
jspaezp
closed
1 year ago
4
[Feature request] Diagnostic information when a wrong mass mode is used
#41
jspaezp
closed
1 year ago
1
Alternative dependency for fastobo?
#40
wfondrie
closed
1 year ago
3
Integration with IO packages
#39
bittremieux
opened
1 year ago
0
Version when installing using conda
#38
bittremieux
closed
1 year ago
0
loading spectrum by usi can't find m/z
#37
wsnoble
closed
1 year ago
1
how to import mass data pymzml package
#36
jianghudaoshi
closed
1 year ago
1
refactored tests to fit the current implementation
#35
jspaezp
closed
1 year ago
1
M1 Mac installation
#34
jspaezp
closed
1 year ago
0
Milestones for next release
#33
jspaezp
closed
1 year ago
3
Use 13C mass difference for isotope precursor removal
#32
bittremieux
closed
2 years ago
0
Annotating precursor peak.
#31
jopoehls
closed
1 year ago
1
annotate_peptide_fragments() got an unexpected keyword argument 'neutral_losses'
#30
Seb-Leb
closed
1 year ago
7
Support Python 3.10
#29
bittremieux
closed
1 year ago
1
Add ProForma documentation
#28
bittremieux
closed
1 year ago
0
Provide contributing guidelines
#27
bittremieux
closed
1 year ago
0
Bugfix/multiple static mod set
#26
jspaezp
closed
2 years ago
5
[BUG] Setting twice static modifications doubles the offset
#25
jspaezp
closed
2 years ago
2
Annotated sequence peptide string
#24
jspaezp
opened
2 years ago
15
annotate_molecule_fragment adds SMILES string instead of the structure
#23
roman-bushuiev
closed
2 years ago
2
Document pyteomics cmass
#22
bittremieux
closed
1 year ago
0
No keyword argument neutral_losses for annotate_peptide_fragments
#21
Trulsson
closed
3 years ago
2
Empty spectrum plotting
#20
bittremieux
closed
1 year ago
0
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