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bluegenes
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MakeMyTranscriptome
assemble, annotate, and assess transcriptomes in a single step
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Annotation subset: Transrate "good" contigs
#24
bluegenes
opened
8 years ago
0
change params to use Trinity version 2.1.x
#23
bluegenes
closed
8 years ago
0
Get "email" option working
#22
bluegenes
closed
8 years ago
0
run params in masterlog
#21
bluegenes
closed
8 years ago
1
document csv input
#20
bluegenes
closed
8 years ago
0
GFF output from Annotation table
#19
bluegenes
closed
8 years ago
0
csv input for assembly + quality tools
#18
bluegenes
closed
8 years ago
0
assembly assessment tools -> own virtual tool
#17
bluegenes
closed
8 years ago
1
argparse: main and "advanced" options
#16
bluegenes
closed
8 years ago
0
"closest" blast --> reciprocal
#15
bluegenes
opened
8 years ago
0
Salmon
#14
bluegenes
closed
8 years ago
1
Homebrew/Linuxbrew
#13
bluegenes
opened
8 years ago
0
Docker
#12
bluegenes
opened
8 years ago
1
Finish AWS Install + Setup Protocol
#11
bluegenes
opened
8 years ago
0
extend diamond blast to include stitle
#10
bluegenes
closed
8 years ago
1
optional programs for annotation module
#9
bluegenes
closed
8 years ago
0
diamond: annotation table
#8
bluegenes
closed
8 years ago
0
diamond --> pipeline
#7
bluegenes
closed
8 years ago
1
random subset memory usage
#6
bluegenes
closed
8 years ago
2
manage db -- busco
#5
bluegenes
closed
8 years ago
0
Manage db -- PFAM
#4
bluegenes
closed
8 years ago
2
KEGG mapping
#3
bluegenes
closed
8 years ago
1
manage db - initial install
#2
bluegenes
closed
8 years ago
1
Read the docs
#1
bluegenes
closed
8 years ago
0
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