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bodkan
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slendr
Population genetic simulations in R 🌍
https://bodkan.net/slendr
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Reschedule finishing block to the `first()` phase of the final tick
#160
bodkan
closed
1 month ago
1
problem with ts_eigenstrat
#159
Frasella
closed
2 months ago
4
Update tskit to v0.5.7
#158
bodkan
closed
1 week ago
0
Change handling of output paths
#157
bodkan
closed
1 month ago
1
Fix handling of "truncated" models and forward models starting at times larger than just 1
#156
bodkan
closed
6 months ago
1
Support for non-neutral slendr/SLiM simulations via custom, user-defined SLiM code
#155
bodkan
closed
6 months ago
9
slendr has trouble exporting conda paths
#154
janxkoci
closed
8 months ago
7
Problem installing tskit (during setup_env())
#153
gsilvaarias
closed
8 months ago
8
Fix SLiM-presence test in `check_dependencies()`
#152
bodkan
closed
8 months ago
1
Should slendr's internal `pylib.py` script be sourced into a dedicated environment?
#151
bodkan
closed
8 months ago
1
no attribute 'get_pedigree_ids'
#150
willright28
closed
10 months ago
17
Add support for SLiM simulations on Windows
#149
bodkan
closed
9 months ago
38
Avoid repeated resetting of spatial bounds (closes #147)
#148
bodkan
closed
10 months ago
1
fixes for SLiM 4.1 changes to SpatialMap
#147
bhaller
closed
10 months ago
9
A few questions regarding tspop integration into slendr
#146
bodkan
closed
11 months ago
9
Implement experimental support for the tspop algorithm
#145
bodkan
closed
1 year ago
5
Support for manually created tree sequences with spatial information
#144
bodkan
closed
1 year ago
2
Locking population resizes with expansions/contractions interferes with determining the direction of time
#143
bodkan
closed
11 months ago
1
Update engines.R
#142
GKresearch
closed
10 months ago
7
Puzzling differences of statistics computed from recapitated SLiM tree sequences compared to theory
#141
bodkan
closed
1 year ago
16
Controlling mutation rate?
#140
ivanscotti
closed
1 year ago
1
remove rgdal asap
#139
rsbivand
closed
1 year ago
3
Implement rudimentary, experimental IBD squashing
#138
bodkan
closed
1 year ago
0
Fix saving / loading of tree sequences after simplification to a subset of sampled individuals
#137
bodkan
closed
1 year ago
3
There's an issue with saving and/or loading a simplified tree sequence (carrying slendr metadata)
#136
bodkan
closed
1 year ago
1
Change the plot_model layout algorithm
#135
bodkan
closed
1 year ago
7
Fixing various gene flow errors
#134
bodkan
closed
1 year ago
2
Population names need to be valid python identifiers, but `population()` does not require this
#133
IsabelMarleen
closed
1 year ago
8
Incorrect error messages in `gene_flow()` caused by time errors
#132
IsabelMarleen
closed
1 year ago
3
`plot_model()` does not adjust migration arrow ends when `log=TRUE`
#131
IsabelMarleen
closed
1 year ago
3
Fixes for minor issues discovered during work on demografr and other things
#130
bodkan
closed
1 year ago
2
Improve robustness of the "simulation finished" check in `slim()`
#129
bodkan
closed
6 months ago
5
Implement interface to genealogical nearest neighbors
#128
bodkan
opened
1 year ago
0
Add utility functions to print commands needed to run back-end scripts on the command-line
#127
bodkan
closed
1 year ago
0
A fundamental design question for Slendr
#126
jielab
closed
1 year ago
2
Figure out a way to run SLiM-based simulations on Windows
#125
jielab
closed
8 months ago
16
slim binary not found
#124
jielab
closed
1 year ago
9
New ts_ibd function
#123
bodkan
closed
1 year ago
2
Use NOT_CRAN=false on Windows-based GitHub Actions
#122
bodkan
closed
1 year ago
1
Allow for the possibility to have non-spatial populations in an otherwise spatial model
#121
bodkan
closed
1 year ago
1
Fix undesirable artefacts during map zooming/cropping for some CRS
#120
bodkan
closed
1 year ago
2
Look into nicer reporting of errors after recent purrr changes
#119
bodkan
closed
8 months ago
0
Do not automatically activate slendr Python virtual environment upon loading the package
#118
bodkan
closed
1 year ago
0
New error upon loading library
#117
hmoots
closed
2 years ago
4
Strange things are happening with custom CRS projections in some corners of the world
#116
bodkan
closed
1 year ago
10
Consider a balance between R-like NA values and -1 values in slendr tables
#115
bodkan
closed
8 months ago
2
Add an option to add user-defined symbolic names to sampled individuals
#114
bodkan
opened
2 years ago
0
Correctly handle "truncated" models
#113
bodkan
closed
6 months ago
0
Make serialization of slendr models to disk optional (for faster msprime coalescent runs)
#112
bodkan
closed
2 years ago
2
Issues with replication of the explore_model() population history graph figure
#111
archgen
closed
2 years ago
2
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