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brentp
/
smoove
structural variant calling and genotyping with existing tools, but, smoothly.
Apache License 2.0
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IMPRECISE Confuse
#194
cfz1998
closed
2 years ago
2
libcrypto.so.1.0.0: cannot open shared object file error with biocontainers
#193
georgiesamaha
closed
2 years ago
9
mosdepth error
#192
pauline-ng
closed
2 years ago
2
Error in lumpy-filter
#191
Martaprf
closed
2 years ago
5
gff format for GRCh38
#190
redincla
opened
2 years ago
3
panic: parsing time during smoove call
#189
redincla
opened
2 years ago
6
"hangup" error
#188
cfz1998
opened
2 years ago
2
SV lengths
#187
cfz1998
closed
2 years ago
4
cannot rm quantized.bed.gz.csi
#186
jkreinz
closed
2 years ago
6
smoove annotation
#185
Johnsonzcode
opened
2 years ago
3
sent empty file-name to xopen.Ropen or no records found with 'gene' type in gff
#184
asmlgkj
opened
2 years ago
9
smoove duphold error during merge
#183
jjfarrell
closed
2 years ago
9
Smoove for WES
#182
alisaadat922
closed
2 years ago
1
smoove exits with panic: exit status 1
#181
am8265
opened
2 years ago
1
lumpy_filter slower with 2 threads than 1
#180
jemunro
opened
2 years ago
2
unknown chromosome, Could not parse the header, sample line not found
#179
mdozmorov
closed
2 years ago
2
False negative duplication due to low MAPQ
#178
lee039
opened
2 years ago
7
Use of smoove in haploid organisms
#177
pabloangulo7
opened
2 years ago
2
SVTyper Unknown argument
#176
janawold1
closed
2 years ago
3
smoove paste --that all files have the same number of variants
#175
sulinq
closed
2 years ago
1
smoove merge error :svtools: error: unrecognized arguments: -r
#174
sulinq
opened
2 years ago
2
Missing libcrypto.so.1.0.0 hack.
#173
JohnUrban
closed
2 years ago
1
Feature Request: allow tmpdir specification
#172
JohnUrban
closed
2 years ago
2
smoove annotate not adding exonic overlaps
#171
fakedrtom
closed
2 years ago
8
How to run without high-coverage regions filter
#170
ducerer
closed
2 years ago
1
smoove paste error: PREND not defined in header reindexing did not help
#169
robertwhbaldwin
opened
2 years ago
10
smoove paste error; files with different number of variants; how to fix?
#168
robertwhbaldwin
closed
2 years ago
3
Smoove missed small duplications
#167
y1025i
opened
2 years ago
0
smoove annotate error "panic: runtime error: invalid memory address or nil pointer dereference" is it a problem?
#166
robertwhbaldwin
opened
2 years ago
4
Smoove population SV calling support for Illumina Dragen SV VCF files
#165
WimSpee
opened
2 years ago
1
smoove genotype step taking a very long time for some samples
#164
robertwhbaldwin
opened
2 years ago
6
Population level caling: Genotype Step concept & Merging step
#163
nitha26
closed
2 years ago
1
smoove call running out of memory (65 G) with small WGS cohort
#162
robertwhbaldwin
opened
2 years ago
1
Is there any installation guide for this smoove package ?
#161
Navin-techi
closed
2 weeks ago
6
lumpy executable not found in PATH ?
#160
Navin-techi
opened
2 years ago
8
Splitting the sample across node for parallel ?
#159
Navin-techi
opened
2 years ago
3
([E]lumpy-filter) mv: cannot stat ‘SmooveTest_out/001MS.split.bam.tmp.bam’: No such file or directory
#158
nitha26
closed
2 years ago
6
Required tag PRPOS not found
#157
Saeideh-Ashouri
opened
3 years ago
3
smoove docker version: ([E]lumpy-filter)
#156
nitha26
closed
3 years ago
2
Specifying multiple BAM files in singularity command
#155
Phillip-a-richmond
closed
3 years ago
6
Docker fails on conda create
#154
srynobio
closed
3 years ago
2
Using CRAM instead of BAM when genotyping samples for SVs?
#153
Saeideh-Ashouri
closed
3 years ago
1
INFO/END< POS
#152
lindenb
opened
3 years ago
3
smoove/paste + singularty + 1185 vcfs: argument list too long
#151
lindenb
closed
3 years ago
3
error opening fasta file: ref/hg38.fasta: no fai for fasta
#150
dridk
closed
3 years ago
2
Question about a particular deletion call
#149
davidecarlson
closed
3 years ago
2
"Missing pair end parameters:mean stdev" - different read lengths creating problems?
#148
JSegueni
opened
3 years ago
9
lumpy_filter: error while loading shared libraries: libcrypto.so.1.0.0
#147
DanielOsmond
closed
3 years ago
0
error when starting lumpy, panic: runtime error: invalid memory address or nil pointer dereference
#146
xyxss
closed
3 years ago
9
lumpy_filter: command not found
#145
fengpku
opened
3 years ago
1
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