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brielin
/
Popcorn
Software for estimating correlation of trait effect sizes across populations
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np.bool deprecated in newer versions of NumPy
#43
seantcaron
opened
2 months ago
3
AssertionError: Expect col to appear in data only once.
#42
Tingwei1021
opened
5 months ago
0
'AssertionError: Expect col to appear in data only once' in compute function
#41
poppyzenzi
closed
1 year ago
1
Discrepancies between Popcorn GitHub Description and Actual Results
#40
Taewoong-Ha
opened
1 year ago
0
SNPs with extremely low P-value
#39
Apprentice2
opened
1 year ago
0
Transethnic Genetic Correlation Analysis Discrepancy and Data Validation Inquiry
#38
Taewoong-Ha
opened
1 year ago
0
Fixes #23 KeyError: ['beta', 'SE'] when using Z
#37
ofrei
opened
1 year ago
0
compute fails with "operands could not be broadcast together with shapes" error
#36
ofrei
opened
1 year ago
3
Can I use Popcorn for mixed linear model (MLM)-based GWAS?
#35
PenguinPartyHo
opened
1 year ago
0
RuntimeWarning: invalid value encountered in sqrt, and output pge with NaN value
#34
Steven-Shixq
opened
1 year ago
1
both genetic-impact correlation and genetic-effect correlation greater than 1
#33
gunns2
closed
1 year ago
2
Fix requirements.txt to make popcorn installable again
#32
pettyalex
closed
1 year ago
0
Popcorn is not currently installable with setup.py or pip install
#31
pettyalex
closed
1 year ago
0
possibly python3 version of popcorn
#30
shafayetrahat
closed
2 years ago
11
Port the project to python3
#29
shafayetrahat
closed
2 years ago
0
numpy.float64' object cannot be interpreted as an integer
#28
smuchakiel
opened
2 years ago
1
Seeking help: can't replicate "Test files" results
#27
Penguin0007
closed
2 years ago
4
Can't install popcorn
#26
Penguin0007
closed
2 years ago
1
does the code work with python2 only ? This is no longer the most current Python release.
#25
alex46015
closed
1 year ago
2
Runtime error
#24
bethrusnak
closed
2 years ago
2
KeyError: ['beta', 'SE'] when using Z
#23
opain
opened
2 years ago
1
self.windows error
#22
km25jung
closed
3 years ago
0
No such file or directory: 'Popcorn/test/EUR_ref.bed.bim'
#21
opain
closed
3 years ago
1
Can't install 'bed-reader>=0.1.2' issue
#20
zhangchuyi
opened
3 years ago
2
install POPCORN in Windows 7
#19
zhangchuyi
closed
3 years ago
1
ValueError: Input must be 1- or 2-d.
#18
zhangchuyi
closed
3 years ago
1
ModuleNotFoundError: No module named 'fit'
#17
zhangchuyi
closed
3 years ago
0
Inconsistent test results
#16
FEIFEI502
closed
3 years ago
2
installing issue
#15
bnj50
closed
3 years ago
1
Assertion Error when calling "pysnptools"
#14
YunfengRuan
closed
3 years ago
2
Popcorn on python 3
#13
1Coleman
closed
3 years ago
1
Error when setting scores. Block width may exceed number of SNPs being stored Try increasing --SNPs_to_store
#12
marielohcs
closed
4 years ago
1
rsIDs required?
#11
jdarias93
opened
4 years ago
2
Understanding correlation when heritability is low
#10
gpwhiz
closed
4 years ago
1
RuntimeWarning
#9
wlz0726
opened
4 years ago
0
NameError: name 'xrange' is not defined
#8
joomango
closed
4 years ago
1
'beta' & 'SE' works but 'OR' & 'p-value' does not, how to preprocesss summary statistics (Neff)
#7
char4816
closed
4 years ago
9
AttributeError: 'dict' object has no attribute '__NUMPY_SETUP__'
#6
Apprentice2
opened
5 years ago
5
SNPs with very low P-value
#5
Kyoko-wtnb
opened
6 years ago
0
Incorporate externally pre-computed weighting of per-SNP heritability
#4
fumi-github
closed
6 years ago
1
input files
#3
zammyfh
closed
6 years ago
1
Fixed a minor bug in printing the number of filtered SNPs
#2
fumi-github
closed
7 years ago
0
Import of IPython module
#1
tomgreen66
closed
7 years ago
1