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broadinstitute
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infercnv
Inferring CNV from Single-Cell RNA-Seq
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Error in seq_len(max(obs_annotations_groups)): argument must be coercible to non-negative integer
#526
qiuju-Zhang
opened
1 year ago
9
X and Y chromosome missing in 'infercnv.png'
#525
wlc9355
opened
1 year ago
3
infercnv::run seems to run only on single core independent of num_threads
#524
tplehto
opened
1 year ago
7
plot_cnv(): Error: C stack usage 7969476 is too close to the limit
#523
tingxie2020
opened
1 year ago
1
simpleLoess(y, x, w, span, degree = degree, parametric = parametric, : span is too small
#522
Yijia-Jiang
opened
1 year ago
2
The dendrogram is strange in infer1.14.0
#521
LeeWang21
opened
1 year ago
3
output files "infercnv.references.txt" and "infercnv.observations.txt " not found
#520
wcl2260
opened
1 year ago
5
-hspike modeling of normalsToUse throws an error
#519
jachou1
opened
1 year ago
8
plot_cnv() failed to cluster samples into 'k_obs_groups'
#518
Ray-Xia778
opened
1 year ago
2
Gene count influencing CNV detection
#517
andynkili
closed
1 year ago
2
observations part heatmap is empty
#516
BioLaoXu
opened
1 year ago
4
Count Data Required
#515
DarioS
closed
1 year ago
2
Error in UseMethod("is.rooted") : no applicable method for 'is.rooted' applied to an object of class "NULL"
#514
AntoniaChroni
opened
1 year ago
4
Error in file(file, "rt") : cannot open the connection
#513
galaxyeee
opened
1 year ago
7
Error: Python module igraph was not found.
#512
AntoniaChroni
closed
1 year ago
4
which version of R is needed for the installation of infercnv? 3.6.0 is the only version?
#511
tingxie2020
opened
1 year ago
1
Computing nearest neighbor graph: Error in m[match(oldnodes,m)] <-1:(N-1): NAs are not allowed in sybscripted assignments.
#510
krigia
opened
1 year ago
10
Some confusion about cluster_by_groups
#509
Rui-Jing
opened
1 year ago
5
Question about analysis_mode
#508
Sa753
opened
1 year ago
1
NGCHM error
#507
Sa753
closed
1 year ago
0
Error step 19 Error in type.convert.default(X[[i]], ...) : (converted from warning) 'as.is' should be specified by the caller; using TRUE >
#506
Sa753
opened
1 year ago
3
Error in do.call(rbind, mcmc[[j]]) : second argument must be a list
#505
Sa753
opened
1 year ago
7
Fail to make any visual results(.png)
#504
Geryxu08
opened
1 year ago
1
Fail to make final infercnv heatmap
#503
Cristinex
opened
1 year ago
25
Error in step 17
#502
dbswls0322
opened
1 year ago
2
The expression quantity is inconsistent with the result of CNV
#501
callaL
opened
1 year ago
1
CNV values for all genes
#500
biotech25
opened
1 year ago
2
inferCNV can not analysis the same data like before jump out with "span is too small"
#499
yintz
opened
1 year ago
1
Resolution in random_trees method
#498
Aeg22
opened
1 year ago
2
Error in step #15 when running infercnv function
#497
lunching
opened
1 year ago
1
problem
#496
Hananebh
opened
1 year ago
8
How to install a previous version of infercnv?
#495
vincentguo0418
opened
1 year ago
3
InferCNV
#494
krigia
opened
1 year ago
2
hspike modeling in step 3 fails
#493
avdl25
closed
1 year ago
5
Differentiate tumor versus normal cells using overall CNA level
#492
StefTesta
opened
1 year ago
1
Error: C stack usage 7953984 is too close to the limit
#491
yintz
opened
1 year ago
3
sparse matrices are also supported ?
#490
xiaoshanpai
opened
1 year ago
3
Replacing read.table with data.table::fread()
#489
SNOL2
closed
1 year ago
2
choice of reference for bone marrow
#488
marie2T
opened
1 year ago
1
Error in step 15: Error in irlba(A = t(x = object), nv = npcs, ...)
#487
sheilakwok
closed
1 year ago
2
Detect the CNV in a specific chromosome
#486
muntajihad
closed
1 year ago
2
Error in base::rowMeans(x, na.rm = na.rm, dims = dims, ...) : 'x' must be an array of at least two dimensions
#485
xliu38
closed
1 year ago
2
A sudden pause at STEP 7
#484
judyyyyhsgfh
closed
1 year ago
2
Missing output files in R version 4.2.1 and 4.2.2
#483
crg11
opened
1 year ago
1
group color change?
#482
Levin928
opened
1 year ago
4
infercnv.observations.txt not found
#481
sukyorsuki
opened
1 year ago
1
Add ground truth CNV from bulk tumor for subcluster mode
#480
bwang1324
closed
1 year ago
2
conda install issue -- submit package to conda-forge?
#479
ssobt
closed
1 year ago
0
ERROR about cluster_by_groups=FALSE
#478
xiasijian
opened
1 year ago
1
Error in !all.equal(ref_group_names, orig_ref_group_names) : invalid argument type
#477
qiangfan2022
opened
1 year ago
1
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