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broadinstitute
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infercnv
Inferring CNV from Single-Cell RNA-Seq
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Step 18 - *** caught segfault ***
#476
bk2272
opened
1 year ago
2
Error in "STEP 15: computing tumor subclusters via leiden" - using master branch
#475
jpark27
opened
1 year ago
11
Error in simpleLoess(y, x, w, span, degree = degree, parametric = parametric, : span is too small
#474
yunbokai
opened
1 year ago
5
Error of computing tumor subclusters via leiden
#473
hahia
opened
1 year ago
4
inferCNV : Error in obs_dendrogram[[1]] : subscript out of bounds
#472
ly55
opened
1 year ago
4
Can't find all branches' annotation for Clonality trees
#471
doou0
opened
1 year ago
1
Run(): Running out of CPU hours, how to use up_to_step?
#470
Dzhan4
opened
1 year ago
1
Extraction of subclusters from inferCNV output
#469
Yurany2908
opened
1 year ago
1
inferCNV reference cells for Integrated Seurat Object & heatmap interpretation
#468
garrett-lam
opened
1 year ago
3
Can I use the tool to compare different strains of haploid organisms
#467
JesseRop
opened
1 year ago
1
Is there a way to extract Bayesian probabilities from step 18?
#466
xliu38
closed
1 year ago
1
Result only having Obsevation plot and not Reference plot
#465
Cristinacondel1
opened
1 year ago
1
Gene ordering file
#464
sararosengithub
opened
1 year ago
1
broken `hclust_method`: cells of similar profilles not clustering together
#463
tbrunetti
opened
2 years ago
4
Infercnv and seurat (related to issue #215)
#462
jjacob12
opened
2 years ago
14
STEP 15 error when using NULL reference
#461
tbrunetti
closed
2 years ago
6
Errors in Step 15
#460
parkjooyoung99
opened
2 years ago
1
HMM run argument must be explicitly given or infercnv::run gives an error
#459
alexanderlewis99
closed
1 year ago
2
Subsequent runs of the HMM
#458
hahia
opened
2 years ago
1
ValueError: need at least one array to concatenate
#457
dhy2002
opened
2 years ago
1
Session Killed at Step 18
#456
cecile-meier-scherling
opened
2 years ago
2
A minor issue in CreateInfercnvObject function
#455
vwtlin
opened
2 years ago
4
Error while creating NGCHM object
#454
bhabakd
opened
2 years ago
1
The pdf draw step error when running the 120 thousand cell by infercnv
#453
honghh2018
opened
2 years ago
1
Interpret add_to_seurat results
#452
baigal628
opened
2 years ago
1
if some gene in count-matrix should be filted
#451
lizhan96
opened
2 years ago
1
Error at Step 18 of infercnv::run when validating infercnv object
#450
zvittorio
closed
2 years ago
2
Error Encountered during Step 17: Error in subclusters_per_chr[[chr]] : subscript out of bounds
#449
kiklata
closed
1 year ago
10
A blank plot
#448
WangJingwen21
opened
2 years ago
1
Identification of malignant cells
#447
WangJingwen21
opened
2 years ago
3
STEP18 issue with child proccesses dying without explanation
#446
tbrunetti
closed
2 years ago
7
Tutorial Error
#445
e-arslan
opened
2 years ago
1
Error during step 4 with plot_steps
#444
Prathyusha-konda
opened
2 years ago
3
error using scale_data and HMM
#443
msherafatian
opened
2 years ago
1
Error with gene order file generation "duplicate row names"
#442
Prathyusha-konda
closed
2 years ago
0
median filtering and clustering by groups
#441
msherafatian
opened
2 years ago
1
faded out signal
#440
msherafatian
opened
2 years ago
2
Determining "CNA Signal" and "CNA Correlation" from inferCNV output files
#439
pshukla99
opened
2 years ago
6
Allow adding a custom column prefix when using add_to_seurat
#438
matt-sd-watson
closed
2 years ago
1
Minimum normal sample as reference ?
#437
bitcometz
closed
2 years ago
2
Error in CreateInfercnvObject function
#436
Victor-K27
closed
2 years ago
5
Error in readRDS(reload_info$expected_file_names[[i]]) : error reading from connection
#435
naddoun
closed
2 years ago
2
Extracting/Generating overall CNV scores for each cell and plotting onto UMAP
#434
Gibbatron
opened
2 years ago
2
Problem running subcluster mode with leiden method
#433
Gibbatron
opened
2 years ago
3
How to change BayesMaxPNorm (filter CNVs) without retuning the HMM step?
#432
ranli2
opened
2 years ago
1
step 20 Error in file(file, ifelse(append, "a", "w")) : cannot open the connection
#431
andynkili
closed
2 years ago
2
Does 'run' function find reference group automatically.?
#430
pengjini
opened
2 years ago
1
how to handle data from multiple patients
#429
rpeys
opened
2 years ago
4
Successfully completed, but no plot...
#428
gdk43
opened
2 years ago
2
Where can I read an explanation of the InferCNV algorithm?
#427
nadavbra
closed
2 years ago
1
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