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broadinstitute
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infercnv
Inferring CNV from Single-Cell RNA-Seq
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no obvious difference between immune cells and epithelial cells form tumor patients
#574
zhangdae
opened
1 year ago
4
Please use "options(scipen = 100)" before running infercnv if you are using the analysis_mode="subclusters"
#573
stroke1989
opened
1 year ago
1
Running infercnv on a large dataset
#572
ConDem94
opened
1 year ago
1
Very long runtime or job hanging during plotting
#571
FerrenaAlexander
opened
1 year ago
1
Question about sample annotation file for organoids
#570
Silvia-Bio
opened
1 year ago
2
Question: is it able to predict tumor purity using inferCNV?
#569
seoyoungLee646466464646644
opened
1 year ago
0
inferCNV on harmony integrated data
#568
cv55
opened
1 year ago
0
random tree error report
#567
sadiexiaoyu
closed
1 year ago
1
Threshold value
#566
seongguheo
opened
1 year ago
0
Output file issue
#565
dbswls0322
opened
1 year ago
0
Error in if (num_genes_removed > 0) { : argument is of length zero
#564
Bongjun86
opened
1 year ago
0
Error in plot.new() : figure margins too large
#563
1JYL123
opened
1 year ago
1
Error in plot_cnv() Step - Error in seq.default(x.range[1], x.range[2], length.out = nb_breaks) : 'from' must be a finite number
#562
vfincke
opened
1 year ago
1
Subcluster issue (leiden_resolution)
#561
dbswls0322
opened
1 year ago
2
When I use B cells as a reference to identify cancer cells, why some genes on chromosome 6 missing appear all tested cells
#560
yanwuanxin
opened
1 year ago
1
Step 18 error
#559
lindsdudley
opened
1 year ago
5
Row clustering error?
#558
J-Nicholson1
opened
1 year ago
1
STEP 18 running more than 18 hours and not forward to the next steps
#557
42kuroniko
closed
1 year ago
2
STEP 18 Errors when running Bayesian Network Model on HMM predicted CNVs
#556
mluciarr
opened
1 year ago
2
infercnv::run: Error in require_above_min_cells_ref(infercnv_obj, min_cells_per_gene = min_cells_per_gene) : 998
#555
Urja25
opened
1 year ago
1
The output file "infercnv.observations.txt " not produced
#554
imrjesh
opened
1 year ago
2
ERROR: configuration failed for package ‘rjags’
#553
archana433
closed
1 year ago
2
Thank you for putting together such a comprehensive tool for use!
#552
WangJingwen21
opened
1 year ago
1
Different number of clusters in '17_HMM_predHMMi6.rand_trees.hmm_mode-subclusters.cell_groupings' and '17_HMM_predHMMi6.rand_trees.hmm_mode-subclusters.pred_cnv_genes.dat'
#551
parkjooyoung99
opened
1 year ago
1
the old version of infercnv!!!
#550
Dana11T
opened
1 year ago
1
False positives for PBMC data
#549
SirKuikka
opened
1 year ago
3
Error: Cell names in Seurat object and infercnv results do not match
#548
ant1688
opened
1 year ago
1
error during HMM prediction
#547
veramazzara
opened
1 year ago
2
non-numeric argument to binary operator
#546
WangJingwen21
opened
1 year ago
1
Error in step 15
#545
kangjiajinlong
opened
1 year ago
1
docker image
#544
mea2712
closed
1 year ago
2
Error in mcfork() :
#543
jmzhang1911
closed
1 year ago
0
altered chromosome order in the heatmap
#542
veramazzara
opened
1 year ago
2
Cannot allocate vector of sze 128GB ; in asMethod(object): sparse->dense coercion: allocating vector of size
#541
FerrenaAlexander
closed
1 year ago
6
What information does "run.final.infercnv_obj" contain
#540
Dana11T
opened
1 year ago
1
Running into error while running wdl workflow for infercnv on terra
#539
smk5g5
opened
1 year ago
2
Some issues about reference cells and operation
#538
39652its
opened
1 year ago
1
Can I generate new infercnv heatmap with cells ordered by myself?
#537
Yijia-Jiang
opened
1 year ago
3
error with add_to_seurat
#536
jlmalin
opened
1 year ago
2
How to access CNV matrix used for heatmap?
#535
Yijia-Jiang
opened
1 year ago
2
error when using HMM=T
#534
mayan2009
opened
1 year ago
1
Error in plot.new() : figure margins too large
#533
745757
opened
1 year ago
8
I have something wrong in running infercnv
#532
antho199
closed
1 year ago
0
CNV alterations in expected normal cells
#531
r-osorio
opened
1 year ago
1
I have some problems in creatinfercnvObject
#530
xiangLi3945
opened
1 year ago
3
Heatmap vs run.final.infercnv_obj@expr_data
#529
jemorlanes
opened
1 year ago
4
subcluster issues
#528
callaL
opened
1 year ago
9
Error in seq_len(max(obs_annotations_groups)): argument must be coercible to non-negative integer Traceback:
#527
imrjesh
opened
1 year ago
8
Error in seq_len(max(obs_annotations_groups)): argument must be coercible to non-negative integer
#526
qiuju-Zhang
opened
1 year ago
9
X and Y chromosome missing in 'infercnv.png'
#525
wlc9355
opened
1 year ago
3
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