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broadinstitute
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infercnv
Inferring CNV from Single-Cell RNA-Seq
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Error in m[match(oldnodes, m)] <- 1:(N - 1) : NAs are not allowed in subscripted assignments
#624
biobirds9
closed
9 months ago
2
Is inferCNV suitable for hematologic tumors?
#623
YZJenny
opened
10 months ago
1
Filtering of genes on Step 2 of -infercnv::run()-
#622
jemorlanes
opened
10 months ago
0
Issue with Empty Heatmap of Observations in Final Output (infercnv.png)
#621
jwweii
opened
10 months ago
2
Raw count or Normalized count?
#620
parkjooyoung99
closed
10 months ago
2
Standalone NG-CHM Viewer
#619
Silvia-Bio
closed
10 months ago
0
CreateInfercnvObject() ERROR
#618
bantaz
closed
10 months ago
0
Error in Step 15
#617
juliach2
opened
10 months ago
10
Help!!! Too many General_HCL_all_observations files and my infercnv.png is black
#616
smukeji
opened
10 months ago
1
[Memory Shortage] Using random trees on ST dataset (>640 GB not enough)
#615
jpark27
opened
11 months ago
1
q and p information
#614
RaghadShu
opened
11 months ago
3
Issue with k_obs_groups
#613
deeKal
opened
11 months ago
1
plot_cnv error
#612
lvliang418
opened
11 months ago
1
use infercnv to distinguish the subtypes of tumor cells
#611
Bouncysig18
opened
11 months ago
0
How to deal with multiple patients?
#610
zhouzhendiao
opened
11 months ago
1
inferCNV score
#609
pmarzano97
opened
11 months ago
1
Error in heatmap.cnv(obs_data, Rowv = obs_dendrogram, Colv = FALSE, cluster.by.row = TRUE
#608
Nisanity007
opened
11 months ago
2
Error in NGCHM::chmNewColorMap after updating inferCNV
#607
frsil
opened
11 months ago
0
Prepare for upcoming Seurat v5 release
#606
saketkc
opened
12 months ago
0
Problem retrieving infercnv.observations.txt and infercnv.references.txt output files
#605
RoyPollak
closed
1 year ago
1
object 'Csparse_validate' not found
#604
Milad-Razavi
opened
1 year ago
2
infercnv in other studies besides cancer?
#603
mohammadghorbani28
opened
1 year ago
1
Heatmap PNG still blank after setting bitmapType to Xlib on Ubuntu 22.04
#602
wudustan
opened
1 year ago
1
Possible source of error when comparing unequal number of vectors
#601
hiraksarkar
opened
1 year ago
0
CNV express all gene position of chromsome problem
#600
dajunlee
opened
1 year ago
1
Infercnv::run() stop after "STEP 17: HMM-based CNV prediction"
#599
YlioLo
opened
1 year ago
1
what to use for ref_group_name?
#598
mbihie
opened
1 year ago
1
inferCNV clustering hierarchy troubleshoot
#597
dajunlee
opened
1 year ago
1
infercnv.observations_dendrogram.txt file not found
#596
smukeji
closed
1 year ago
0
Tumor subcluster partition method question
#595
jemorlanes
opened
1 year ago
2
How to distinguish between normal and malignant epithelial cells?
#594
YuliaInn
opened
1 year ago
3
residual expression scale in plot
#593
mea2712
opened
1 year ago
0
Infercnv.observations_Dendrogram.txt
#592
zhongguozhiwang
opened
1 year ago
2
why is there an error when drawing the result file?
#591
zhongguozhiwang
opened
1 year ago
8
Error in step 18 "Run Bayesian Network Model on HMM predicted CNVs" when using more cells?
#590
ahdee
opened
1 year ago
0
inferCNV on 10x
#589
wang-ziyin1997
opened
1 year ago
0
Error while plotting obs_dendrogram
#588
ahdee
closed
1 year ago
1
error in cluster cells plot infercnv
#587
zhangq220
closed
1 year ago
0
inferCNV can not cluster same clones together
#586
yintz
opened
1 year ago
2
ref_group_name for infercnv object obtained from a Seurat object
#585
mbihie
closed
1 year ago
0
the meaning of count.data slot of an infercnv object
#584
BBBlanca
opened
1 year ago
0
infercnv::plot_cnv() takes too much time
#583
wangziqi0321
opened
1 year ago
1
Blank plots fixed but not plotted by clusters
#582
lindsdudley
opened
1 year ago
0
Can healthy cells from other studies be used as a reference?
#581
iwanttoeatyo
closed
1 year ago
0
Error in Step 15 plot_cnv(): unable to start device PNG, occurred with output_format="pdf"
#580
ImNotaGit
opened
1 year ago
2
erroer in step18
#579
Joya-zy
opened
1 year ago
0
Dendrogram different to the sample results
#578
raq1233
opened
1 year ago
0
what is included in HMM_CNV_predictions.HMMi6.leiden.hmm_mode-subclusters.Pnorm_0.5.pred_cnv_genes.dat?
#577
rpeys
opened
1 year ago
1
I got blank plot using quick start code
#576
yuyuyuto001
opened
1 year ago
0
unable to open connection to X11 display
#575
suhuanhou
opened
1 year ago
2
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