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broadinstitute
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infercnv
Inferring CNV from Single-Cell RNA-Seq
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Using InferCNV for PBMCs
#674
Urja25
opened
1 month ago
0
InferCNV on normalized and scaled data
#673
floriankreten
opened
1 month ago
0
STEP 18 error
#672
lifan2022
opened
1 month ago
0
infercnv heatmap appearance of 'Reference' (non-malignant) cells: opinion required
#671
jjacob12
opened
1 month ago
0
Method question : Bayesian Network Latent Mixture Model
#670
kane9530
opened
2 months ago
0
gtf.gz as input
#669
nilchia
opened
2 months ago
0
Step 7 computing tumor subclusters via random_trees NEVER FINISH
#668
mluciarr
opened
2 months ago
0
Not getting the reference part of the heatmap
#667
Cristinacondel1
opened
3 months ago
2
Subsetting inferCNV object
#666
itismeangie
opened
3 months ago
0
Cell type
#665
dongjuleem
opened
4 months ago
0
Error in `ScaleData()`: ! No layer matching pattern 'data' found. Please run NormalizeData and retry Run `rlang::last_trace()` to see where the error occurred.
#664
Noralii
opened
4 months ago
0
CNVs in the reference cells
#663
NaCo-Pt
opened
4 months ago
0
Plotting inferCNV heatmap of several samples
#662
farhadfaghihi4
opened
5 months ago
4
How to roll back inferCNV to a previous version
#661
Ryeeeeeeeeee
opened
5 months ago
0
Issues with "infercnv::add_to_seurat" function in infercnv analysis
#660
MinxiaoYang
opened
5 months ago
0
Error in validate_infercnv_obj(infercnv_obj): Problem detected w/ infercnv_obj and Error: No feature overlap between existing object and new layer data
#659
Prakrithi-P
opened
5 months ago
0
inferCNV development and support on hiatus
#658
brianjohnhaas
opened
5 months ago
2
Section of inferCNV heatmap blacked out
#657
julie-jch
opened
5 months ago
0
Is the output "17_HMM_predHMMi6.leiden.hmm_mode-subclusters.pred_cnv_genes.dat" on the cellular level?
#656
mahadabihie
opened
5 months ago
0
Separation epithelial cells in normal and tumour cells
#655
LeaLe88
opened
5 months ago
0
Impact of Filtering Out Highly Expressing Cells
#654
seongguheo
opened
5 months ago
0
Extracting HMM Features for chromosomal arm level
#653
seongguheo
opened
5 months ago
0
Benchmarking against R infercnv
#652
LucaZanella15
opened
6 months ago
0
How to combined lineages
#651
YuanWang2000
closed
6 months ago
0
chmNewColorMap: number of values (752) does not equal number of color (723). It should.
#650
mayan2009
opened
6 months ago
0
HWW has spent too long time.
#649
kiritsugu233
opened
6 months ago
0
Why do the different samples all have the same CNV levels?
#648
mahadabihie
opened
6 months ago
0
Adjustment of parameter 'leiden_resolution' will change the result of run.final.infercnv_obj@expr.data ?
#647
travilucas
opened
6 months ago
0
Error on Step 15: No feature overlap between existing object and new layer data
#646
r-osorio
opened
6 months ago
7
infer cnv on 10x genomics data using Smartseq data as normal reference
#645
yeswzc
opened
7 months ago
1
gene_symbol not working in ngchm
#644
qinghezeng
closed
7 months ago
1
fix inferCNV for issue #342
#643
DC-Jade
opened
7 months ago
0
STEP 19: problem infercnv.NormalProbabilities.PostFiltering.observation_groupings.txt': No such file or directory
#642
sigalgrabois
opened
7 months ago
0
infercnv step 18
#641
shubham-koirala
closed
6 months ago
3
remove lines on heatmap
#640
yintz
opened
7 months ago
0
Is there any way to extract gene names that have deletions from infercnv analysis?
#639
mbihie
opened
7 months ago
2
gene position file not working
#638
mbihie
opened
8 months ago
0
Collapsed Bayesian Model for snRNA-seq Data
#637
yc4346
opened
8 months ago
0
Very large h5ad file
#636
Urja25
opened
8 months ago
5
error during HMM prediction without reference cells
#635
Mashuaiii
opened
8 months ago
0
"Error in vapply" when running plot_cnv
#634
r-osorio
opened
8 months ago
0
Cell names in Seurat object and infercnv results do not match
#633
r-osorio
opened
8 months ago
2
After Running InferCNV, dendrogram and other files missing
#632
carmelo7a
closed
8 months ago
2
Unable to Do Initial Install of infercnv
#631
rstagnitta
opened
8 months ago
0
Assistance Required with infercnv Analysis - Error in STEP 15
#630
moewarangel
opened
8 months ago
3
scheduled cores 1, 2, 3, 4 did not deliver results, all values of the jobs will be affected?
#629
parkjooyoung99
opened
8 months ago
0
re-generating hierarchical resulr obsversion data.
#628
shanshenbing
opened
9 months ago
0
inferCNV stopped running at step 18 with no error reported
#627
suhuanhou
opened
9 months ago
2
Summarizing the outputs of inferCNV
#626
enBiter
opened
9 months ago
0
calibrated residual expressions
#625
asl58
opened
9 months ago
0
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