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broadinstitute
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palantir-workflows
Utility workflows for the DSP hydro.gen team (formerly palantir)
BSD 3-Clause "New" or "Revised" License
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Exposing the number of cores in PerformPopulationPCA
#148
fabio-cunial
closed
1 year ago
1
Disk size in PerformPopulationPCA
#147
fabio-cunial
closed
1 year ago
1
Single core tasks in PerformPopulationPCA
#146
fabio-cunial
opened
1 year ago
0
Add utility for creating IGV session from list of bams, vcfs, intervals
#145
rickymagner
closed
1 year ago
0
Dd toggle benchmark vc fs fingerprint
#144
ddsva1
closed
1 year ago
1
vcfdist evaluation
#143
ddsva1
closed
1 year ago
0
Update RTG docker for vcfeval to fix FORMAT filters ignored
#142
rickymagner
closed
1 year ago
1
Add error messages in R scripts rather than just quit for PRSWrapper
#141
rickymagner
closed
1 year ago
0
Better/more tests please
#140
kachulis
opened
1 year ago
3
Added argument QUAL limit in F1 plot for FunctionalEquivalence workflow
#139
michaelgatzen
closed
1 year ago
0
SimpleBenchmark doesn't run without providing evaluation bed file
#138
rickymagner
closed
12 months ago
1
Update for PRS on hg38
#137
kachulis
closed
1 year ago
0
Update .dockstore.yml to include Dipcall
#135
rickymagner
closed
1 year ago
0
Handle ploidy in chrX and chrY outside of the PAR region
#133
ty-kay
closed
1 year ago
1
New Utilities WDL: DownsampleAndCollectCoverage
#132
michaelgatzen
closed
1 year ago
2
PRS check z-score before APOL1 correction
#131
kachulis
closed
1 year ago
0
Added Dipcall WDL and reformat README for utilities
#130
rickymagner
closed
1 year ago
0
BCFTools docker: Added the `python-is-python3` package
#129
michaelgatzen
closed
1 year ago
0
Add pipeline for benchmarking SVs
#128
rickymagner
closed
10 months ago
3
Added WDLs for the RNA QC metric collection/concordance as part of a …
#127
kockan
closed
1 year ago
0
Long Read RNA Benchmarking Pipeline First Draft
#126
kockan
closed
1 year ago
0
Multiqc in Terra
#125
kachulis
closed
1 year ago
0
Added a pipeline for phasing VCFs and benchmarking their performance with WhatsHap
#124
rickymagner
closed
1 year ago
0
Add Glimpse2Imputation pipeline
#123
michaelgatzen
closed
11 months ago
0
AggregatePRSResults updates
#122
kachulis
closed
1 year ago
1
Added pysam docker, for use elsewhere
#121
rickymagner
closed
1 year ago
0
Added utilities for bam stats over intervals
#120
rickymagner
closed
1 year ago
0
Added missing comma in interval list input for Terra
#119
rickymagner
closed
1 year ago
0
Added documentation on Interval Files commonly used
#118
rickymagner
closed
1 year ago
2
Lowercase pcs in results csv
#117
kachulis
closed
1 year ago
0
Aggregate PCs
#116
kachulis
closed
1 year ago
1
SimpleBenchmark -- a new WDL for benchmarking VCFs
#115
rickymagner
closed
1 year ago
0
Partial Aggregation Set handling, refactor, and testing
#114
kachulis
closed
1 year ago
2
QC Report updates
#113
kachulis
closed
2 years ago
2
Yf add combine summaries wf
#112
yfarjoun
closed
1 year ago
1
Updated python-data-slim and using it in FunctionalEquivalence WDLs
#111
michaelgatzen
closed
2 years ago
1
Revert "FE: rewrote F1 evaluation using Pandas"
#110
michaelgatzen
closed
2 months ago
1
Updated CollectBenchmarkSucceeded utility
#109
rickymagner
closed
2 years ago
1
Automatically deliver QC'd results file to delivery bucket
#108
kachulis
closed
2 years ago
0
Improved formatting of samples table in prs aggregation report
#107
kachulis
closed
2 years ago
0
Handle situation where control sample is not resulted for one (or more) conditions
#106
kachulis
closed
2 years ago
0
Formatting improvements to aggregation report
#105
kachulis
closed
2 years ago
0
Fix copyright in license
#104
kachulis
closed
2 years ago
0
New workflow: CompareBenchmarks and fixed repo CircleCI tests
#103
michaelgatzen
closed
1 year ago
0
Aggregate PRS: Added logic to compare control sample vs expected control results
#102
michaelgatzen
closed
2 years ago
0
Pass through is_control_sample
#101
kachulis
closed
2 years ago
0
Remove personal dockers in PRS pipeline
#100
kachulis
closed
2 years ago
1
PRS missing sites QC
#99
kachulis
closed
2 years ago
0
Pass through lab_batch in PRSWrapper, and dynamically find tables
#98
kachulis
closed
2 years ago
0
FE: rewrote F1 evaluation using Pandas
#97
michaelgatzen
closed
2 years ago
0
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