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bvilhjal
/
ldpred
MIT License
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LDpred for missing effect sizes
#63
vaxherra
closed
5 years ago
2
Develop
#62
bvilhjal
closed
5 years ago
1
Potential bug in reporting problematic SNPs
#61
babak-ra
closed
5 years ago
1
Disabling frequency discrepancy check causes error
#60
babak-ra
closed
5 years ago
5
Without validation dataset,how can i conduct the step3 to calculate polygenic risk score?
#59
Z199486H
closed
5 years ago
4
coord_genotypes.py cannot find chromosome in SS dataset
#58
hershwin
closed
5 years ago
2
[BUG] parse nucleotides error in GWAS summary file
#57
wavefancy
closed
5 years ago
7
[BUG] in use custom format
#56
wavefancy
closed
5 years ago
1
LDpred wouldn't work for large sample size small pho
#55
wavefancy
closed
4 years ago
14
ImportError LDpred
#54
g-menta
closed
5 years ago
1
selection of risk score from 7 output files.
#53
wym0072003
closed
5 years ago
1
PRS weights files were not found, 'score' on 'p+t' outputs
#52
wym0072003
closed
5 years ago
1
python3 ldpred CLI tool issue
#51
vplagnol
closed
5 years ago
5
Value error in Gibbs
#50
choishingwan
closed
5 years ago
0
coord TypeError in coord_genotypes.py
#49
Ambrosinae
closed
5 years ago
3
Format of score file
#48
privefl
closed
5 years ago
1
coord -- KeyError in sum_stats_parsers.py
#47
alussier17
closed
5 years ago
1
LDpred 1.0.0 using much more memory than previous versions
#46
daniel-hui
closed
5 years ago
5
Add gz file read support for the custom format
#45
choishingwan
closed
5 years ago
0
coord -- UnboundLocalError: local variable 'prs' referenced before assignment
#44
privefl
closed
5 years ago
1
coord -- TypeError: No conversion path for dtype: dtype('<U1')
#43
privefl
closed
5 years ago
2
Fixed annoying -log(OR) bug resulting..
#42
bvilhjal
closed
5 years ago
0
global name 'non_zero_chromosomes' is not defined
#41
gmgaous
closed
5 years ago
1
TypeError: unsupported operand type(s) for *: 'NoneType' and 'float'
#40
wym0072003
closed
5 years ago
2
Develop
#39
bvilhjal
closed
5 years ago
0
For SUM_STATS_FILE, coord seems to use the full path (with extension), not the prefix
#38
privefl
closed
5 years ago
3
# gm_ld_radius option / suggested edits
#37
ilarsf
opened
5 years ago
1
Coordination Matches a Small Proportion of SNPs
#36
anderseng
closed
5 years ago
2
installation error
#35
trptyrphe11
closed
5 years ago
1
Duplicate error with coord_genotypes.py
#34
seunghun23
closed
5 years ago
5
MemoryError
#33
kateishim
closed
5 years ago
6
The posterior sampling seems to had never been performed in the LDpred.py
#32
borisevichdi
closed
5 years ago
3
LDpred.py and validate.py produce different R^2
#31
borisevichdi
closed
5 years ago
3
ldpred installs successfully, but an error shows up on import
#30
annashcherbina
closed
5 years ago
5
coord_genotypes.py mysteriously stops w/o reporting error while working on e.g. chr7 or 10
#29
marielohcs
closed
5 years ago
3
Prepare for v1 pull
#28
bvilhjal
closed
5 years ago
0
Create a version 1.0 release
#27
bvilhjal
closed
5 years ago
1
Make compatible with python 3
#26
bvilhjal
closed
5 years ago
0
A division by 0 bug for some chromosomes..
#25
bvilhjal
closed
5 years ago
0
gwas summary data format
#24
N-damo
closed
5 years ago
1
Update LDpred to allow for more flexible format
#23
choishingwan
closed
5 years ago
1
How does LDpred calculate the number of cases and controls?
#22
rbpeng
closed
5 years ago
1
Indels are not allowed in LDpred
#21
wavefancy
opened
5 years ago
3
--local_ld_file_prefix isn't working in LDpred_inf.py
#20
bvilhjal
closed
5 years ago
0
AUC calculation is not exact
#19
bvilhjal
closed
5 years ago
1
Errors with validate.py
#18
bioinf173
closed
5 years ago
10
coord_genotypes.py consistently unable to find final chromosome in SSF?
#17
rbpeng
closed
5 years ago
3
debug in LD_pruning_thres.py
#16
rickyota
closed
5 years ago
0
bug report
#15
bastia0321
closed
6 years ago
0
bug report on printing 'chrom'
#14
bastia0321
closed
6 years ago
4
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