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bvilhjal
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ldpred
MIT License
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Questions about the logs: 'Current PRS correlation', 'The slope for predictions with weighted effects' etc.
#113
YiweiNiu
closed
4 years ago
1
Installing using "pip install" omits LDpred.py
#112
AlexandreHutton
closed
4 years ago
1
Standard deviation not variance should be indicated in sp.stats.norm.rvs()
#111
rickyota
closed
4 years ago
1
Bigmerge
#110
bvilhjal
closed
4 years ago
0
Develop
#109
bvilhjal
closed
4 years ago
0
My GWAS hits are too significant for LDpred
#108
lassefolkersen
closed
4 years ago
2
TypeError: float argument required, not numpy.ndarray
#107
Qinqiword
closed
4 years ago
2
Can you add the BASIC format
#106
gmgaous
closed
4 years ago
2
issue with plink and score function
#105
ishanparanjpe
closed
4 years ago
2
got an error message with finding chromosomes in ldpred
#104
mindy1315
closed
4 years ago
2
How to cite the software?
#103
lassefolkersen
closed
4 years ago
1
hapmap 3 reference information
#102
agnetelundgaard
closed
4 years ago
2
ldpred score error 2
#101
nandobonf
closed
4 years ago
1
bugs report
#100
mxcai
closed
4 years ago
1
LDpred score script
#99
afrahshafquat
closed
4 years ago
2
Are these all of columns in summary statistics require to run LDpred.py coord?
#98
jystatistics
closed
4 years ago
3
MemoryError problem in coord step
#97
hxchengtj
closed
4 years ago
1
Import error from cplinkio - GLIBC2.14
#96
sn-GT
closed
4 years ago
2
Implement Joel's LD-reference-free LDpred
#95
bvilhjal
opened
5 years ago
1
Fixing output of progress bars
#94
borisevichdi
closed
4 years ago
0
Error in install
#93
jystatistics
closed
4 years ago
4
Bug in opposite strand checking in coord
#92
piotor87
closed
4 years ago
1
Killed: 9
#91
wagrob
closed
4 years ago
1
LDpred rho values
#90
Minta821
closed
4 years ago
2
Chromosome header cannot be found in summary statistic file
#89
yangithub33
closed
5 years ago
1
Bug fixes and refactoring of tests.
#88
jdijamco
closed
4 years ago
0
`pip install ldpred` does not install `LDpred.py` script
#87
delocalizer
closed
4 years ago
4
LDpred.py script referred to in documentation not supplied in pip install with Python 3.6
#86
delocalizer
closed
5 years ago
2
P+T
#85
bnj50
closed
4 years ago
3
LDpred Score error - missing phenotype file
#84
Sabor117
closed
5 years ago
1
SNP stds are not correctly computed
#83
babak-ra
closed
4 years ago
5
Raw beta in LDpred weight file does not match beta in input sumstats
#82
huilisabrina
closed
4 years ago
2
sum_stats_parsers flips effect size signs
#81
babak-ra
closed
4 years ago
4
Infinite genome-wide lambda inflation and estimated genome-wide heritability
#80
marielohcs
closed
4 years ago
5
prs adjustments
#79
bnj50
closed
5 years ago
1
svd did not converge in linear least square
#78
yingji15
closed
4 years ago
1
LDpred-inf file re-generated when using different --PS
#77
N-damo
opened
5 years ago
3
[Update] Allow LSTANDARD in parameter list
#76
choishingwan
closed
5 years ago
0
Tiny missing percent sign
#75
rwdavies
closed
5 years ago
1
Unable to open object
#74
mjalbrzikowski
closed
4 years ago
6
using of three datasets: reference panel, summary statistics panel and validation dataset
#73
wym0072003
closed
5 years ago
2
LD-score estimated heritabilities are not robust.
#72
babak-ra
closed
4 years ago
6
How can I get the beta in STANDARD format?
#71
biostat0903
closed
5 years ago
1
error in gibbs
#70
hershwin
closed
4 years ago
28
Develop
#69
bvilhjal
closed
5 years ago
0
LDpred score error
#68
babak-ra
closed
5 years ago
1
Could validation sites be a subset of LD refercence sites for same samples
#67
wym0072003
closed
5 years ago
2
Recognizing X chromosome, "Unable to open object (object 'chrom_23' doesn't exist)"
#66
Ambrosinae
closed
4 years ago
5
Path to hm3-file mixes absolute and relative
#65
jakobgrove
closed
5 years ago
1
LDpred score does not give an error when it cannot find SNP weights file
#64
babak-ra
closed
5 years ago
1
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