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cambiotraining
/
hpc-intro
Practical course on running jobs on a HPC
https://cambiotraining.github.io/hpc-intro/
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VSCode greedy extensions
#47
tavareshugo
opened
4 months ago
0
Software setup on CSD3 workshops
#46
tavareshugo
opened
5 months ago
1
Change "scratch" path to `rds/hpc-work` to emulate CSD3
#45
tavareshugo
opened
6 months ago
0
Slides for `scp` and `rsync`
#44
tavareshugo
closed
7 months ago
0
add `cd ~/scratch/hpc_workshop` to exercises
#43
tavareshugo
closed
8 months ago
0
Update conda/mamba materials
#42
tavareshugo
closed
7 months ago
0
Software requirements
#41
tavareshugo
opened
8 months ago
0
Adding singularity to 04-software.md
#40
RaqManzano
closed
8 months ago
0
Saphire nodes
#39
tavareshugo
closed
8 months ago
0
Conda issues
#38
tavareshugo
closed
10 months ago
3
RFS on CSD3
#37
tavareshugo
opened
1 year ago
0
overhaul dependencies section
#36
tavareshugo
closed
8 months ago
1
Update conda section
#35
tavareshugo
closed
8 months ago
0
Fix issue #33
#34
Alylaxy
closed
1 year ago
1
Use --parsable for job dependencies
#33
tavareshugo
closed
1 year ago
1
module not working when submitting script
#32
tavareshugo
closed
1 year ago
0
Github action failing
#31
tavareshugo
closed
1 year ago
0
add scheduler comparison
#30
tavareshugo
opened
1 year ago
0
Update FileZilla instructions for TOTP
#29
tavareshugo
opened
1 year ago
3
convert to quarto course template
#28
tavareshugo
closed
8 months ago
0
Update VS Code instructions for TOTP
#27
tavareshugo
opened
1 year ago
1
Environmental impact note
#26
tavareshugo
opened
2 years ago
0
ECDSA fingerprint key
#25
tavareshugo
closed
1 year ago
0
spin up instances automatically at start of course
#24
tavareshugo
closed
8 months ago
1
add module for matplotlib
#23
tavareshugo
closed
1 year ago
0
source activate needs to be replaced with conda activate
#22
tavareshugo
closed
2 years ago
2
Job arrays - exercise 3 depends on previous exercise
#21
tavareshugo
closed
8 months ago
2
Not enough space for Conda environments
#20
tavareshugo
closed
1 year ago
3
Tutorial on using MobaXterm
#19
tavareshugo
closed
2 years ago
0
Running workflows (Nextflow or Snakemake)
#18
tavareshugo
opened
2 years ago
1
Use Nano instead of VS Code
#17
tavareshugo
closed
2 years ago
1
`--mem` is ignored by SLURM
#16
tavareshugo
closed
2 years ago
1
solutions for very long-running jobs
#15
tavareshugo
opened
2 years ago
1
Filezilla screenshots
#14
tavareshugo
closed
2 years ago
0
Conda errors
#13
tavareshugo
closed
2 years ago
0
invalid web link
#12
qiwang7
closed
2 years ago
0
free -h and ncpus does not work on Mac
#11
tavareshugo
closed
2 years ago
0
Common issues
#10
tavareshugo
opened
3 years ago
1
add a mention of md5sum check while talking about data transfer?
#9
qiwang7
opened
3 years ago
0
shell self-assessment and refresher quiz
#8
qiwang7
closed
2 years ago
2
download data from public databases
#7
qiwang7
closed
1 year ago
1
add how to gain interactive access to compute node
#6
tavareshugo
closed
2 years ago
2
add section about dependency chains
#5
tavareshugo
closed
2 years ago
1
add interactive use of compute nodes
#4
tavareshugo
closed
2 years ago
1
add section about gnu parallel
#3
tavareshugo
opened
3 years ago
0
Quiz for HPC usage best practices
#2
tavareshugo
closed
3 years ago
5
Course Schedule
#1
tavareshugo
closed
2 years ago
4