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cancerit
/
CaVEMan
SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer samples. Supports both bam and cram format via htslib
http://cancerit.github.io/CaVEMan
GNU Affero General Public License v3.0
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caveman count crashes with "corrupted size vs. prev_size" when ignore_regions_file is compressed
#123
FMakosza
opened
1 month ago
0
Release/1.15.4
#122
blex-max
closed
2 months ago
0
1.15.4 - fixes to install process and unmatched normal panel generation
#121
blex-max
closed
2 months ago
0
Feature/umn bughunt
#120
blex-max
closed
2 months ago
0
ease and modernise installation a bit
#119
blex-max
closed
2 months ago
3
Error during mstep for whole exome sequencing data
#118
pawanchk
opened
8 months ago
1
Continuous "core dumped" errors during the M step
#117
KANGseungseok
opened
1 year ago
2
Implement.pm line 378 - species-assembly
#116
acarbome7
opened
1 year ago
0
Inquiry about the CaVEman option for running WGS data
#115
KANGseungseok
opened
1 year ago
0
Caveman 1.14.0 Compilation error
#114
Avramis
closed
1 year ago
1
Filtering fail "."
#113
Mathieu179
opened
1 year ago
0
Feature/nf
#112
davidrajones
opened
1 year ago
0
WIP: DO NOT MERGE! - Hotfix/1.15.2
#111
davidrajones
closed
2 years ago
0
Merge - Warning
#110
pawanchk
opened
2 years ago
0
Mstep - Error fetching reference sequence
#109
pawanchk
opened
2 years ago
1
split step does not work correctly 1.13.15
#108
Liyang-Zhang
closed
2 years ago
4
ignore region files
#107
onrerdogan
opened
2 years ago
0
providing several samples for normal
#106
husamia
opened
3 years ago
1
Hotfix/1.15.1
#105
davidrajones
closed
3 years ago
0
Feature/tumour in normal
#104
davidrajones
closed
3 years ago
0
Fix uninitialized memory read and free of memory not in heap.
#103
gijsschroder
opened
4 years ago
0
updated htslib
#102
rulixxx
closed
4 years ago
0
fixed bug in fai test
#101
rulixxx
closed
4 years ago
2
different tumor / normal platforms could be a warning instead of an error?
#100
jsmedmar
opened
4 years ago
0
Hotfix/1.14.1 - DO NOT MERGE
#99
ghost
closed
4 years ago
0
Feature/read pos speedup
#98
ghost
closed
4 years ago
0
Feature/log exp speedup
#97
ghost
closed
4 years ago
1
Add check for ignore overlaps at the start and end of a region
#96
ghost
closed
4 years ago
4
VCF where ref == alt
#95
kmhernan
opened
4 years ago
0
1.13.15: -x and -y parameters don't work in estep
#94
zhuyezhang
opened
4 years ago
1
Update Makefile
#93
souramoo
opened
5 years ago
0
WIP: Hotfix/1.13.15 - DO NOT MERGE
#92
ghost
closed
5 years ago
2
DO NOT MERGE: Add AMPLICON and TARGETED to accepted protocol list. Change RNA-seq, …
#91
ghost
closed
5 years ago
1
Output for every site?
#90
matthew-ackerman
closed
5 years ago
2
what do these mean please
#89
beginner984
closed
5 years ago
1
Feature - Make assembly and species required commandline arguments
#88
ghost
closed
5 years ago
3
DO NOT MERGE! Hotfix/1.13.10
#87
ghost
closed
5 years ago
0
1.13.9 - split error
#86
WillieYu
opened
5 years ago
1
WORK IN PROGRESS - Feature/automake
#85
ghost
opened
5 years ago
1
1.13.5 - mstep errors - negative positions
#84
ghost
opened
5 years ago
0
1.13.5 - Segmentation fault (core dumped) - Estep
#83
ghost
closed
5 years ago
1
estep issue with version 1.13.3 . - fai_access Error
#82
ChristopheLegendre
closed
6 years ago
3
Installation problem - CaVEMan 1.7.5
#81
jsmedmar
closed
6 years ago
2
Error when executing split command
#80
MeganDruce
closed
1 year ago
2
DO NOT MERGE hotfix/1.13.1
#79
ghost
closed
6 years ago
0
Feature/overlapping reads
#78
ghost
closed
6 years ago
0
caveman estep 1.12.0
#77
OCS-Consult
closed
6 years ago
12
Pre-release tag overlapping_reads
#76
keiranmraine
closed
6 years ago
3
WIP: Fixes #74
#75
keiranmraine
closed
6 years ago
2
Split bug (sparse data edge-case)
#74
keiranmraine
closed
6 years ago
3
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