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caporaso-lab
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mockrobiota
A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
http://mockrobiota.caporasolab.us
BSD 3-Clause "New" or "Revised" License
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Update raw hyperlinks
#43
gregcaporaso
closed
7 years ago
1
Permanent "issues" or notes pages for each mock community dataset
#42
nbokulich
closed
7 years ago
4
additional test in check_data_integrity.py
#41
gregcaporaso
opened
7 years ago
1
Update sample metadata
#40
nbokulich
closed
7 years ago
1
Updated documentation and inventory
#39
nbokulich
closed
7 years ago
9
Updated CONTRIBUTING.md and dataset metadata docs
#38
nbokulich
closed
7 years ago
0
Added searchable inventory of mock communities
#37
nbokulich
closed
7 years ago
0
BUG: fixes #34
#36
gregcaporaso
closed
7 years ago
1
Incorporate graphical representations of community composition data
#35
nbokulich
opened
7 years ago
0
mock-11 metadata is incorrect?
#34
gregcaporaso
closed
7 years ago
0
Mock 10 reverse reads gz is corrupted
#33
shiffer1
closed
7 years ago
3
Mock-3 data
#32
shiffer1
closed
7 years ago
5
Mock-11 seems to be listed as B1 and bacterial data, It should be F2 and eukaryotic data
#31
shiffer1
closed
8 years ago
3
mock-5 data
#30
wmercurio
closed
7 years ago
3
mock-7 link to MG-RAST isn't very useful
#29
gregcaporaso
closed
7 years ago
1
mock-8 raw data needs to be converted to fastq
#28
gregcaporaso
closed
7 years ago
2
phenotype data
#27
naarkhoo
closed
7 years ago
5
additional mock communities to include
#26
gregcaporaso
closed
7 years ago
5
BUG: fixed incorrect information
#25
gregcaporaso
closed
8 years ago
0
Add code to automatically compile dataset metadata into summary table
#24
nbokulich
opened
8 years ago
1
ENH: added @wmercurio's database identifiers for mock-6, mock-7, mock-8
#23
gregcaporaso
closed
8 years ago
1
Specify reference taxonomy files (e.g., %OTU ID) used for annotation of expected-taxonomy.tsv files
#22
nbokulich
closed
7 years ago
0
MAINT: clean up test code, add flake8 checking
#21
jairideout
closed
8 years ago
0
DOC: adding @nbokulich's document with some of my modifications
#20
gregcaporaso
closed
8 years ago
4
add contributing guide
#19
gregcaporaso
closed
8 years ago
3
Updated sample metadata files to pass data integrity checks
#18
jairideout
closed
8 years ago
2
ENH: sample ID validation across metadata and taxonomy files
#17
jairideout
closed
8 years ago
0
MAINT: added @nbokulich's updated files
#16
gregcaporaso
closed
8 years ago
2
DOC: added @nbokulich's human readable descriptions
#15
gregcaporaso
closed
8 years ago
0
Issue 11
#14
nbokulich
closed
8 years ago
1
Nbokulich branch
#13
nbokulich
closed
8 years ago
0
fix expected Silva taxonomy files
#12
jairideout
closed
8 years ago
2
pass through the human-readable-description fields for all metadata
#11
gregcaporaso
closed
8 years ago
3
indicate in human-readable-description the difference between mock-7 and mock-8
#10
gregcaporaso
closed
8 years ago
0
ENH: fixes #8, #3. includes modifications made by @nbokulich in #7
#9
gregcaporaso
closed
8 years ago
1
add raw-data-url for mock-11
#8
jairideout
closed
8 years ago
2
corrected precision for expected files (except for silva expected tax…
#7
nbokulich
closed
8 years ago
1
add sample-metadata.tsv validation
#6
gregcaporaso
closed
8 years ago
0
MAINT: added travis-ci badge
#5
gregcaporaso
closed
8 years ago
0
make test code pep8 compliant
#4
gregcaporaso
closed
8 years ago
1
correct the precision in expected taxonomy files
#3
gregcaporaso
closed
8 years ago
3
Add basic data integrity checking
#2
jairideout
closed
8 years ago
0
ENH: added data files generated by @nbokulich
#1
gregcaporaso
closed
8 years ago
0
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