caracal-pipeline stimela issues

caracal-pipeline / stimela

Stimela 2.0

GNU General Public License v2.0

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issues

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Pre validation errors

#338 SirFelixOtieno closed 1 week ago
4
Should assign_based_on assignments be "weak"?

#337 o-smirnov opened 2 weeks ago
4
Feature request: add option to ignore unknown assignments

#336 o-smirnov opened 2 weeks ago
1
Feqature request: ancestral lookup namespace

#335 o-smirnov opened 2 weeks ago
0
Add option to set environment variables when invoking singularity

#334 landmanbester opened 1 month ago
7
Add option to dump the recipe config file to the stimela run command

#333 landmanbester closed 1 month ago
1
Feature Request: expose recipe/package paths

#332 JSKenyon opened 1 month ago
0
Feature Request: Step level loops

#331 JSKenyon opened 1 month ago
0
Non str choices in clickify_parameters

#330 landmanbester opened 1 month ago
3
Automatically parse missing as None in clickify_parameters?

#329 landmanbester opened 1 month ago
15
better error message for #327

#328 o-smirnov opened 2 months ago
0
Difficulty passing multiple tuple arguments via stimela cab interface

#327 talonmyburgh opened 2 months ago
6
Issue 323

#326 o-smirnov closed 2 months ago
2
singularity build fails if ~/.singularity doesn't exist

#325 o-smirnov opened 3 months ago
0
Missing parameter error for non-required outputs

#324 SpheMakh opened 3 months ago
0
support mutable schemas based on a substituted parameter

#323 o-smirnov closed 2 months ago
1
removed print

#322 o-smirnov closed 3 months ago
0
because order matters

#321 o-smirnov closed 3 months ago
0
substitutions in step params sometimes evaluated out of order

#320 o-smirnov closed 3 months ago
0
parse element type as function option

#319 SpheMakh closed 3 months ago
0
Fix for bad shlex in venv activation

#318 JSKenyon closed 3 months ago
0
when a recipe input is assigned to via assign, the value is not propagated to step aliases

#317 o-smirnov opened 3 months ago
0
tiny fix for #315

#316 o-smirnov closed 3 months ago
0
misleading error message when an input recipe parameter is unresolved

#315 o-smirnov closed 3 months ago
0
add =DEFAULT() function

#314 o-smirnov opened 3 months ago
0
add "deprecated" property to cab definition

#313 o-smirnov opened 3 months ago
0
failed substitutions in assignments fail with strange error (unsupported type Exception)

#312 o-smirnov closed 3 months ago
0
fixes #309. Fixes #310

#311 o-smirnov closed 3 months ago
2
assign does not allow assigning dicts

#310 o-smirnov closed 3 months ago
0
skip: =IFSET(recipe.foo) doesn't work as expected

#309 o-smirnov closed 3 months ago
0
Make Stimela stats PID aware

#308 JSKenyon opened 4 months ago
0
add recipe result message string

#307 o-smirnov opened 4 months ago
1
add version specifiers to schemas (and potentially cabs and recipes)

#306 o-smirnov opened 4 months ago
7
Stimela stats output only tracks global resource usage

#305 JSKenyon opened 4 months ago
7
Consider changing the name of the "info" namespace to "self" or "this"

#304 sjperkins opened 4 months ago
1
Choose a single style for referencing cultcargo cabs on both the command line and within yaml

#303 sjperkins opened 4 months ago
1
_include (and run and doc command lines) should support an implicit ".yml" or ".yaml" extension

#302 o-smirnov opened 4 months ago
0
PVC deletion error when using the `kube` backend

#301 JSKenyon opened 4 months ago
1
strange `casa-task` flavour in-line script not working

#300 SpheMakh closed 4 months ago
6
Sphe makh patch 1

#299 SpheMakh closed 4 months ago
0
make Py11 compliant

#298 SpheMakh closed 4 months ago
3
Add `post-init`-style option for container initialization

#297 JSKenyon opened 4 months ago
0
Issue 291 & 295

#296 o-smirnov closed 4 months ago
0
add run.ncpu substitution

#295 o-smirnov closed 4 months ago
0
it would be nice to have a for-loop recipe output that is a list of per-iteration outputs from a particular step

#294 o-smirnov opened 4 months ago
2
nested =-formulas not properly evaluated when invoked via {}-substitutions

#293 o-smirnov opened 4 months ago
0
--containall causes crash error when mounting temporary file system in singularity

#292 cgchoza opened 5 months ago
1
add options to python flavour to modify the command line

#291 o-smirnov closed 4 months ago
0
add a "remove_on_error" option to outputs

#290 o-smirnov opened 5 months ago
2
allow wildcard specifiers in _include sections?

#289 o-smirnov opened 5 months ago
8