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castcollab
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tesserae2
Tesserae2: Fast recombination-aware global and local alignment.
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Rewrite in Cython
#35
lrvdijk
closed
2 years ago
0
Branch with profalign code and tests.
#34
jamesemery
opened
3 years ago
0
Branch for refactoring model.py
#33
winni2k
closed
4 years ago
0
Adds mypy testing and type hints for sequence.py
#32
winni2k
closed
4 years ago
5
Strange alignments with when using multiple targets, other anomalies
#31
jonn-smith
opened
4 years ago
12
Black and Pylint don't have the same rules for hanging indentation blocks
#30
jonn-smith
closed
4 years ago
1
Add initial docs; closes #27
#29
winni2k
closed
4 years ago
3
Extremely minor log message change.
#28
jonn-smith
closed
4 years ago
0
Add sphinx documentation
#27
winni2k
closed
4 years ago
2
Write a regression test for "Termination index error"
#26
winni2k
opened
4 years ago
0
Bugfix: Correct deletion traceback
#25
karljohanw
closed
4 years ago
2
Add test for regression: entry point gone
#24
winni2k
closed
4 years ago
0
Termination index error running some CAR-T data
#23
jonn-smith
closed
4 years ago
2
Cleanup for dev env and CLI entry.
#22
jonn-smith
closed
4 years ago
4
Baum-Welch
#21
winni2k
opened
4 years ago
0
Exploring HMM libraries for speed improvement and code complexity reduction
#20
winni2k
opened
4 years ago
0
Type hints for static analysis/documentation
#19
winni2k
closed
4 years ago
0
Github actions continuous integration
#18
winni2k
closed
4 years ago
0
tesserae.py needs a bunch of cleanup
#17
winni2k
opened
4 years ago
5
Speed and RAM use improvements through chunked/compressed storage
#16
winni2k
opened
4 years ago
1
Bugfix: Tesserae parallelization with ThreadPool on lower python versions than 3.8
#15
karljohanw
closed
4 years ago
3
Commit 1a65367 slows down acceptance tests
#14
winni2k
closed
4 years ago
13
Add flake8; apply black
#13
winni2k
closed
4 years ago
1
Comment the main tesserae methods
#12
winni2k
opened
4 years ago
3
Create tesserae.yml
#11
winni2k
closed
4 years ago
1
Update travis yml
#10
winni2k
closed
4 years ago
0
Add line length checking in docstrings with flake8
#9
winni2k
closed
4 years ago
1
Replace argparse with click
#8
winni2k
opened
4 years ago
0
Add continuous integration testing
#7
winni2k
closed
4 years ago
0
Added CLI component to tesserae.
#6
jonn-smith
closed
4 years ago
9
Parallelization of recurrence-calculations.
#5
karljohanw
closed
4 years ago
8
Updated README with dev options.
#4
winni2k
closed
4 years ago
1
Difficulties refactoring acceptance tests
#3
winni2k
opened
4 years ago
4
Add a command line interface
#2
winni2k
closed
4 years ago
10
Speed improvements through effective use of numpy?
#1
winni2k
closed
4 years ago
3