cbg-ethz shorah issues - Githubissues

cbg-ethz / shorah

Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)

GNU General Public License v3.0

41 stars 14 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

options `-h`/`--help` should not exit with failure

#37 DrYak closed 7 years ago
5
IndexError: list index out of range when running amplian.py

#36 nickjhathaway closed 7 years ago
4
Change the mode when opening compressed files

#35 sposadac closed 7 years ago
2
Error running Shorah.py

#34 woodford87 closed 7 years ago
4
Error when running amplian.py

#33 nickjhathaway closed 7 years ago
2
shorah.py fails if there is a . in the FASTA header name

#32 nickloman closed 6 years ago
5
Porting Python 2 to Python 3

#31 sposadac closed 7 years ago
2
Codebase polishes

#30 SoapZA closed 7 years ago
0
Performance improvements

#29 sposadac closed 7 years ago
0
Issues with example amplicon_test

#28 krepsen closed 7 years ago
1
Bug with Shorah wrapper

#27 jblamyatifremer closed 7 years ago
5
Modernising C/C++ Code

#26 SoapZA closed 6 years ago
2
Fix build system and other fixes

#25 SoapZA closed 7 years ago
3
Is it possible to use the error correction step of ShoRAH as a standalone process?

#24 greenstick closed 7 years ago
2
Windowsshift

#23 saminhf closed 8 years ago
1
No such file or directory

#22 nelkibs closed 8 years ago
1
Test ifttt recipe 2

#21 ozagordi closed 8 years ago
0
Test ifttt recipe

#20 ozagordi closed 8 years ago
0
Cygwin - long run time of amplian.py

#19 Murskautuminen closed 8 years ago
6
how to run local mode

#18 homopolymer closed 8 years ago
1
Errors ..

#17 zusman closed 8 years ago
1
Error while run local or global analysis Ubuntu 14.04 64-bit

#16 skbrimer closed 8 years ago
16
Index Error when there is a value at the index

#15 bbravo closed 9 years ago
1
posterior fraction > 1?

#14 bramvrancken closed 9 years ago
5
makefile (operator?) error

#13 rmm257 closed 9 years ago
4
IndexError: list index out of range

#12 WashingtondaSilva closed 10 years ago
8
ValueError: could not convert string to float: not found

#11 som1234 closed 10 years ago
6
SNVs with either Fvar=0 or Rvar=0 should be discarded anyway

#10 ozagordi opened 10 years ago
0
Frequencies in SNVs might be inconsistent

#9 ozagordi closed 6 years ago
1
samtools removed

#8 ozagordi closed 10 years ago
1
Error in vars()

#7 homopolymer closed 10 years ago
8
Empty reads-support when there is only one haplotype

#6 ozagordi opened 10 years ago
0
list index out of range

#5 ghost closed 10 years ago
8
Error in analysing virus data

#4 capemaster opened 10 years ago
10
Quote filename since this can contain funny chars

#3 georgek closed 10 years ago
1
dec.py - "UnboundLocalError: local variable 'prop' referenced before assignment"

#2 kentwait closed 10 years ago
1
Fixing memory copy problem.

#1 holtgrewe closed 11 years ago
0