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cellannotation
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cap-pipeline-config
Building ontology pipeline configurations for the Cell Annotation Platform
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PCL has been removed from ontology list
#95
ubyndr
closed
2 months ago
0
Reverting #93
#94
ubyndr
closed
7 months ago
0
Fix for duplicate terms for equivalent classes from Xenopus bridge files
#93
ubyndr
closed
7 months ago
0
Added Cell tag to 'doublet' and 'junk' terms
#92
ubyndr
closed
8 months ago
0
Xao bridge fix
#91
ubyndr
closed
8 months ago
0
Update neo4j2owl-config.yaml
#90
ubyndr
closed
1 year ago
1
Split Developmental_stage tag into multiple tags based on organisms
#89
ubyndr
closed
1 year ago
2
Addresses #87 change "Animal_cell" label to "Cell" label
#88
ghost
closed
1 year ago
1
Change "Animal_cell" label to "Cell"
#87
ghost
closed
1 year ago
0
Readme update
#86
ubyndr
closed
1 year ago
1
Removed efo-base and added capo-base to ontology list
#85
ubyndr
closed
1 year ago
0
Config ordering issue
#84
ubyndr
closed
1 year ago
0
Rerunning write_organ_tags.py re-sorts the classes
#83
ghost
closed
1 year ago
0
81 split manually edited from neo4j2owl config
#82
ubyndr
closed
1 year ago
3
Split out manually edited neo4j2owl-config.yaml
#81
dosumis
closed
1 year ago
0
Addresses #78 Tag all FBbt terms (anatomy) with Drosophila semantic tag
#80
ghost
closed
2 years ago
2
Addresses #77 Make tags for taxon terms to use in restrictions
#79
ghost
closed
2 years ago
1
Tag all FBbt terms (anatomy) with Drosophila semantic tag
#78
dosumis
closed
2 years ago
0
Make tags for taxon terms to use in restrictions
#77
dosumis
closed
2 years ago
1
Addresses #75 fix typos in semantic tags
#76
ghost
closed
2 years ago
1
Fix typos in semantic tags
#75
ghost
closed
2 years ago
0
Addresses #73 Add ExSeq terms to Assay
#74
ghost
closed
2 years ago
1
Add "ExSeq" terms to Assay autosuggest results
#73
ghost
closed
2 years ago
0
MVP-2058 add description field to semantic tags in yaml configuration
#72
ghost
closed
2 years ago
1
Addresses #70 Add PCL to list of loaded ontologies
#71
ghost
closed
2 years ago
0
Add PCL to list of loaded ontologies
#70
ghost
closed
2 years ago
0
Fixed PATO prefix
#69
ubyndr
closed
2 years ago
1
Added recent dev stage tag queries to config.env
#68
ubyndr
closed
2 years ago
0
Design data structure (YAML) for encoding the business logic for contextual search
#67
dosumis
closed
2 years ago
1
Addresses #65 contextual search for dev stage
#66
ghost
closed
2 years ago
21
Implement contextual search for stage (EPIC)
#65
dosumis
closed
1 year ago
5
Update README.md
#64
ilguzin
closed
2 years ago
0
Addresses #62 Add Seq-Well terms to Assay field
#63
ghost
closed
2 years ago
0
Add terms to configuration for "Assay" field
#62
ghost
closed
2 years ago
0
Change DL query for organ tags to 'overlaps'
#61
ghost
closed
2 years ago
0
Create ODK for CAP helper ontology
#60
dosumis
closed
2 years ago
4
Tweak DL query used to tag terms by organ.
#59
dosumis
closed
2 years ago
0
Addresses #54 Add MAS tag to 'blood'
#58
ghost
closed
2 years ago
1
Cap organ slim integration
#57
ubyndr
closed
2 years ago
7
Related to #53 Extend Disease tag to PATO normal
#56
ghost
closed
2 years ago
1
[IGNORE] Related to #53 extend disease tag to include PATO normal
#55
ghost
closed
2 years ago
1
Support 'blood' in anatomical structure (AKA organ) field
#54
dosumis
closed
2 years ago
0
Extend Disease tag to include PATO 'normal'
#53
dosumis
closed
2 years ago
5
Make CAP ontologies repo that automatically builds OWL from robot templates.
#52
dosumis
closed
2 years ago
1
Fixes #10 Adding configuration for Assay field, extension
#51
ghost
closed
2 years ago
4
Mvp 1306 - Test for bringing in the tissue_list for organ cell semantic tags
#50
ghost
closed
2 years ago
6
MVP-967 Improvements for solr init/index/config scripts
#49
ilguzin
closed
2 years ago
0
Mvp 1306 update neo node labelling generation script to ensure no duplicates
#48
ubyndr
closed
2 years ago
7
Initial commit for layout change
#47
ubyndr
closed
2 years ago
1
Refine list of organs used for semantic tags
#46
ghost
closed
2 years ago
16
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