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cerebis
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bin3C
Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.
GNU Affero General Public License v3.0
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update requirements.txt to work for python2
#41
hyphaltip
opened
1 year ago
0
Check that HD record exists or place in try/catch block
#40
cerebis
opened
2 years ago
0
One huge cluster
#39
orctyr
opened
2 years ago
8
What is the `--tip-size` used for?
#38
ruoyu1123
opened
2 years ago
1
binning with references splitted into fragments
#37
xfengnefx
closed
2 years ago
4
Bump pyyaml from 3.13 to 5.4
#36
dependabot[bot]
opened
3 years ago
0
docker image failure in singularity
#35
koadman
closed
2 years ago
4
Switch to HDF5 based storage of intermediate data types.
#34
cerebis
opened
3 years ago
0
Check what how supplied BAM files were made.
#33
cerebis
opened
3 years ago
0
Memory Error while running in VirtualBox
#32
cerebis
opened
4 years ago
1
Building Infomap Error
#31
davidcalfran
closed
3 years ago
2
Building on OSX requires GCC
#30
cerebis
closed
3 years ago
1
Installation through pip requires newer pip version
#29
cerebis
opened
4 years ago
1
Modifying experimental details post-map creation
#28
cerebis
opened
4 years ago
0
Extract could operate on either type of BAM ordering
#27
cerebis
opened
4 years ago
0
Extracting BAM on combined contact maps not supported
#26
cerebis
opened
4 years ago
0
Merge updates from megahit branch to pgtk
#25
cerebis
closed
4 years ago
0
resolves #23
#24
cerebis
closed
4 years ago
0
Method assumes a cigar string will exist
#23
cerebis
closed
4 years ago
1
Check for the existence of all required files immediately.
#22
cerebis
opened
4 years ago
0
Emphasise read cleanup in documentation
#21
cerebis
opened
5 years ago
0
Help for sub-commands not printing when -h invoked
#20
cerebis
closed
3 years ago
0
Bad use of empty list in cluster_report when no-spades=True
#19
cerebis
closed
5 years ago
0
Consider adding runtime problem introspection and guidance
#18
cerebis
opened
5 years ago
0
Likely "out of memory" exception when analysing a large problem space.
#17
orctyr
closed
5 years ago
18
Switch to storing contact map as hd5
#16
cerebis
closed
3 years ago
1
centos6 image still seems to have "kernel too old"
#15
cerebis
closed
5 years ago
1
Create a Docker and Singularity image
#14
cerebis
closed
5 years ago
0
update readme on pgtk thread
#12
cerebis
closed
5 years ago
0
Resolving yaml.load vulnerability
#11
cerebis
closed
5 years ago
0
Target FASTA path can become stale if files moved
#8
cerebis
closed
4 years ago
1
Consider full workflow UX command
#7
cerebis
opened
5 years ago
0
Default arguments in clustering override those used in map creation
#6
cerebis
closed
5 years ago
0
Print command line to log
#5
cerebis
closed
5 years ago
0
Relative paths when running stages
#4
cerebis
opened
5 years ago
0
[AD] cosmetics
#3
koadman
closed
5 years ago
0
Coverage outlier identification
#2
cerebis
closed
3 years ago
1
Coverage analysis for any assembler type
#1
cerebis
closed
3 years ago
2
Pickling ContactMap
#10
cerebis
closed
3 years ago
0
Poor time complexity of some algorithm choices
#9
cerebis
closed
4 years ago
2