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chanzuckerberg
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cellxgene-census
CZ CELLxGENE Discover Census
https://chanzuckerberg.github.io/cellxgene-census/
MIT License
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[WIP] mrVI training pipeline
#982
ebezzi
opened
7 months ago
1
Remove upperbound on numpy
#980
martinkim0
closed
7 months ago
3
Support NumPy >= 1.25
#979
martinkim0
closed
7 months ago
0
Update copyright notice
#978
ebezzi
closed
6 months ago
3
Reconcile scientific validation of memento with results of automated tests
#977
prathapsridharan
opened
7 months ago
0
chore: Write unit test for differential expression computation
#976
prathapsridharan
closed
7 months ago
1
Regenerate R docs for 1.10.1
#975
ebezzi
closed
7 months ago
0
[python] correct typos in package name
#974
bkmartinjr
closed
7 months ago
0
[python] use new indexer in highly variable gene algo
#973
bkmartinjr
closed
7 months ago
1
[python] drop python 3.8 support
#972
bkmartinjr
opened
7 months ago
0
[misc] chore: upgrade and loosen experimental package requirements
#971
atolopko-czi
closed
7 months ago
0
[misc] full-unittest.yml exits without error even when R tests fail
#970
bkmartinjr
opened
7 months ago
0
[misc] release 1.10 PR
#969
bkmartinjr
closed
7 months ago
1
[python] dependency pins are overly specific
#968
bkmartinjr
closed
7 months ago
2
[builder] update dependency for security advisory
#967
bkmartinjr
closed
7 months ago
1
[misc] fix python dependency check workflow
#966
bkmartinjr
closed
7 months ago
1
[misc] update package dependencies
#965
bkmartinjr
closed
7 months ago
1
[builder] refactor builder to utilize Dask
#964
bkmartinjr
closed
6 months ago
3
feat: allow users to select covariates for memento
#963
atarashansky
closed
7 months ago
6
[python] remove deprecated X_sparse_iter API
#962
bkmartinjr
closed
7 months ago
2
[python] Geneformer updates for July 2024 LTS
#961
mlin
closed
2 months ago
1
Bump aiohttp from 3.9.1 to 3.9.2 in /tools/cellxgene_census_builder
#960
dependabot[bot]
closed
7 months ago
2
Early version of profiler harness
#959
beroy
closed
6 months ago
1
Mark all unit tests in experimental module as such
#958
ebezzi
closed
7 months ago
1
fix pytorch tiledbsoma dependency
#957
atolopko-czi
closed
7 months ago
2
[docs] add `no-sign-request` flag to model download in tutorials
#956
pablo-gar
closed
7 months ago
0
[python] ExperimentDataPipe fails unit tests with tiledbsoma 1.7rc1
#955
bkmartinjr
closed
7 months ago
0
[docs] Fix typo AWS docs
#954
pablo-gar
closed
7 months ago
1
[python] use new indexer after update to 1.7
#953
bkmartinjr
closed
7 months ago
0
including dataset_id into cell_metadata
#952
NikicaJEa
closed
7 months ago
2
Geneformer trainer.predict resulting in IndexError: list index out of range error
#951
drneavin
closed
6 months ago
5
Installation Issues for Geneformer
#950
drneavin
closed
7 months ago
4
Fix Geneformer instructions
#949
atolopko-czi
closed
6 months ago
2
Add tests for the differential expression query output to ensure correctness of implementation
#948
prathapsridharan
closed
5 months ago
0
[misc] move more workflows to self-hosted runners
#947
bkmartinjr
closed
7 months ago
1
[builder] remove unused H5AD files from build
#946
bkmartinjr
closed
7 months ago
1
[misc] scib-metrics scripts
#945
ebezzi
opened
7 months ago
2
fix pytorch typing error
#944
atolopko-czi
closed
7 months ago
1
Pref checker [WIP]
#943
beroy
closed
7 months ago
1
Address `pinv` performance
#941
atolopko-czi
closed
7 months ago
2
Drop invalid cube values in memento builder
#940
atolopko-czi
opened
8 months ago
0
Use subset of covariates for diff expr
#942
atolopko-czi
closed
6 months ago
0
SCVI changes
#939
ebezzi
closed
7 months ago
1
[builder] clean up logging pattern
#938
bkmartinjr
closed
8 months ago
1
highly_variable_genes doesn't work with coords but only value_filter
#937
canergen
closed
8 months ago
2
Misc embedding notebook fixes
#936
ebezzi
closed
8 months ago
1
[builder] Census builds should include only those H5AD files incorporated into the Census SOMA objects
#935
ebezzi
closed
7 months ago
0
[builder] add http fetch retries
#934
bkmartinjr
closed
8 months ago
0
add retries on mirrors.json/requests.json fetching
#933
bkmartinjr
closed
4 weeks ago
1
Bump gitpython from 3.1.40 to 3.1.41 in /tools/cellxgene_census_builder
#932
dependabot[bot]
closed
8 months ago
0
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