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chanzuckerberg
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cellxgene-census
CZ CELLxGENE Discover Census
https://chanzuckerberg.github.io/cellxgene-census/
MIT License
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Improve documentation for supported parameters in get_anndata() method
#1032
hthomas-czi
opened
6 months ago
2
Communicate download progress to Census API users
#1033
hthomas-czi
closed
3 months ago
12
Make convenience methods like get_anndata() have expressive arguments
#1034
hthomas-czi
opened
6 months ago
1
Simplify column_names argument in get_anndata() method
#1035
hthomas-czi
closed
2 months ago
4
Add convenience wrapper for axis_query
#1036
hthomas-czi
opened
6 months ago
1
Add convenience wrapper for querying axis metadata
#1037
hthomas-czi
closed
2 months ago
13
[builder] CxG schema 5 / Census schema 2
#1024
bkmartinjr
closed
5 months ago
6
[python] New embeddings API
#1023
ebezzi
closed
5 months ago
3
Some datasets appear to be missing from census_info in API call.
#1022
kylekimler
closed
5 months ago
4
[docs] Switch R docsite to custom gh runner
#1021
ebezzi
closed
6 months ago
2
[docs] misc docsite adjustments
#1020
ebezzi
closed
6 months ago
0
[misc] `native cell` obsolescence (GeneFormer config)
#1019
bkmartinjr
closed
5 months ago
0
[builder] update uberon and tissue_general mapping to schema 4 standard
#1018
bkmartinjr
closed
6 months ago
1
[builder] wrong UBERON version
#1017
bkmartinjr
closed
6 months ago
2
[misc] remove editable tiledb install
#1016
bkmartinjr
closed
6 months ago
1
[builder] add explicit validation check for primary tissue cells
#1015
bkmartinjr
closed
6 months ago
1
[builder] docker build workflow simplification
#1014
bkmartinjr
opened
6 months ago
0
[misc] update to latest pre-commit GH action
#1013
bkmartinjr
closed
6 months ago
0
[misc] use docker buildx
#1012
bkmartinjr
closed
6 months ago
1
[misc] replace black with ruff format and lint, run autofixes
#1011
martinkim0
closed
6 months ago
3
[builder] fix incorrect filtering of tissue type
#1010
bkmartinjr
closed
6 months ago
0
[builder] incorrect handling of tissue_type
#1009
bkmartinjr
closed
6 months ago
0
Replace black with ruff format and lint, run autofixes
#1008
martinkim0
closed
6 months ago
7
[misc] update pre-commit and associated formatting
#1007
bkmartinjr
closed
6 months ago
2
[builder] thread usage config for main thread
#1006
bkmartinjr
closed
6 months ago
0
[docs] Add embeddings API to docs
#1005
martinkim0
closed
6 months ago
1
[builder] reduce concurrency defaults
#1004
bkmartinjr
closed
6 months ago
0
Geneformer docs errata
#1003
mlin
closed
6 months ago
1
[docs] Fix docstrings for various functions
#1002
martinkim0
closed
6 months ago
7
[builder] log system state in docker prod container entry
#1001
bkmartinjr
closed
6 months ago
0
[misc] Fix CL_0002494 in geneformer pipeline
#1000
pablo-gar
closed
6 months ago
1
feat: 'native cell' -> 'unknown' on geneformer label_blocklist
#999
danieljhegeman
closed
5 months ago
2
[builder] reduce thread counts per worker
#998
bkmartinjr
closed
7 months ago
1
[misc] user-agent tagging
#997
bkmartinjr
closed
1 month ago
4
[misc] action workflows - update versions of various third party actions
#996
bkmartinjr
closed
7 months ago
1
[misc] add support for var embeddings to contrib curation tool
#995
bkmartinjr
closed
6 months ago
1
Prepare 1.10.2 release
#994
ebezzi
closed
7 months ago
0
[builder] update to CxG schema 5.0
#993
bkmartinjr
closed
5 months ago
0
Productization of GH runners for census
#992
beroy
opened
7 months ago
0
[python] update to use tiledbsoma indexer for get_embedding
#991
bkmartinjr
closed
7 months ago
1
[R] R dependency check workflow is failing regularly
#990
bkmartinjr
closed
6 months ago
0
[builder] global order writes
#989
bkmartinjr
opened
7 months ago
0
[builder] use tiledbsoma indexer for builder validation pass
#988
bkmartinjr
closed
7 months ago
0
[misc] update to setup-python v5
#987
bkmartinjr
closed
7 months ago
0
[builder] warnings from py-build.yml workflow
#986
bkmartinjr
closed
7 months ago
1
[builder] docker build warning
#985
bkmartinjr
closed
6 months ago
0
[builder] fix string size overflow in Arrow
#984
bkmartinjr
closed
7 months ago
1
[builder] update dependencies
#983
bkmartinjr
closed
7 months ago
0
[WIP] mrVI training pipeline
#982
ebezzi
opened
7 months ago
1
Remove upperbound on numpy
#980
martinkim0
closed
7 months ago
3
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