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chanzuckerberg
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cellxgene-census
CZ CELLxGENE Discover Census
https://chanzuckerberg.github.io/cellxgene-census/
MIT License
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Only triger the profiler when api changes
#1065
beroy
closed
5 months ago
0
[builder] enable Arrow Dictionary feature flag
#1064
bkmartinjr
closed
4 months ago
1
[R] Pin R TileDB to 0.24
#1063
ebezzi
closed
5 months ago
1
[feat] option to return csr tensors in datapipe
#1062
martinkim0
opened
5 months ago
6
[misc] Prepare for 1.12.0 release
#1061
prathapsridharan
closed
4 months ago
1
[r] Add limits to acceptance tests in R
#1060
ebezzi
closed
4 months ago
0
Is any code grammer wrong?
#1059
Hui-XiangZhang
closed
5 months ago
3
[BUG] Unable to reach cellxgene servers
#1058
LysSanzMoreta
closed
5 months ago
5
"Illegal Instruction" Error When Running Python Script in Docker Container
#1057
ubyndr
closed
5 months ago
0
[docs] Add notebooks for scientific validation of precomputed memento implementation
#1056
prathapsridharan
opened
5 months ago
0
[builder] fix test hang
#1055
bkmartinjr
closed
5 months ago
0
Do scientific validation of memento estimator cube based implementation against vanilla memento
#1054
prathapsridharan
opened
5 months ago
0
[misc] Prepare release 1.11.1
#1053
prathapsridharan
closed
5 months ago
0
Builder tests timing out as of March 13th
#1052
ebezzi
closed
5 months ago
0
[misc] Skip vignettes in r-universe builds but not docsite
#1051
ebezzi
closed
5 months ago
0
[misc] Add release script
#1050
ebezzi
closed
3 months ago
4
[docs] Revert bad CSS changes
#1049
ebezzi
closed
5 months ago
0
get_embedding should not be obs biased
#1048
ebezzi
closed
1 month ago
1
[Profiler] bumping failure threshold from 10% to 15%
#1047
beroy
closed
5 months ago
1
Prepare for 1.11.0 release
#1046
ebezzi
closed
5 months ago
1
[profiler] Fixing branch dependency to TileDB-SOMA
#1045
beroy
closed
5 months ago
1
Test sandbox runners
#1044
beroy
closed
4 months ago
3
[R] fix R dependency check workflow
#1043
ebezzi
closed
5 months ago
1
Publish package release with tiledbsoma==1.8
#1042
bkmartinjr
closed
5 months ago
1
Save and restore state of ExperimentDataPipe to resume iteration
#1041
mmdanziger
opened
5 months ago
2
[builder] ongoing refactoring for Dask
#1040
bkmartinjr
closed
5 months ago
1
census schema should document the logic for the tissue_general mapping
#1039
brianraymor
opened
5 months ago
1
Update analytics with the new contrib embeddings method
#1038
ebezzi
closed
3 months ago
0
Provide method to query recently added metadata in Census API
#1025
hthomas-czi
opened
5 months ago
0
Provide a method for users to get a subsample of data
#1026
hthomas-czi
opened
5 months ago
6
Return warnings if some method parameters are invalid or otherwise ignored
#1027
hthomas-czi
opened
5 months ago
1
Return a checksum value for fetched Census data
#1028
hthomas-czi
closed
3 months ago
10
Add include_cell_type_descendants convenience parameter to get_anndata()
#1029
hthomas-czi
closed
2 months ago
7
Provide access to Collection metadata in Census API
#1030
hthomas-czi
opened
5 months ago
0
Provide access to knowledge artifacts in Census API
#1031
hthomas-czi
opened
5 months ago
16
Improve documentation for supported parameters in get_anndata() method
#1032
hthomas-czi
opened
5 months ago
2
Communicate download progress to Census API users
#1033
hthomas-czi
closed
2 months ago
12
Make convenience methods like get_anndata() have expressive arguments
#1034
hthomas-czi
opened
5 months ago
1
Simplify column_names argument in get_anndata() method
#1035
hthomas-czi
closed
1 month ago
4
Add convenience wrapper for axis_query
#1036
hthomas-czi
opened
5 months ago
1
Add convenience wrapper for querying axis metadata
#1037
hthomas-czi
closed
1 month ago
13
[builder] CxG schema 5 / Census schema 2
#1024
bkmartinjr
closed
4 months ago
6
[python] New embeddings API
#1023
ebezzi
closed
4 months ago
3
Some datasets appear to be missing from census_info in API call.
#1022
kylekimler
closed
5 months ago
4
[docs] Switch R docsite to custom gh runner
#1021
ebezzi
closed
5 months ago
2
[docs] misc docsite adjustments
#1020
ebezzi
closed
6 months ago
0
[misc] `native cell` obsolescence (GeneFormer config)
#1019
bkmartinjr
closed
4 months ago
0
[builder] update uberon and tissue_general mapping to schema 4 standard
#1018
bkmartinjr
closed
6 months ago
1
[builder] wrong UBERON version
#1017
bkmartinjr
closed
6 months ago
2
[misc] remove editable tiledb install
#1016
bkmartinjr
closed
5 months ago
1
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