chanzuckerberg cellxgene-census issues

chanzuckerberg / cellxgene-census

CZ CELLxGENE Discover Census

https://chanzuckerberg.github.io/cellxgene-census/

MIT License

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issues

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Only triger the profiler when api changes

#1065 beroy closed 5 months ago
0
[builder] enable Arrow Dictionary feature flag

#1064 bkmartinjr closed 4 months ago
1
[R] Pin R TileDB to 0.24

#1063 ebezzi closed 5 months ago
1
[feat] option to return csr tensors in datapipe

#1062 martinkim0 opened 5 months ago
6
[misc] Prepare for 1.12.0 release

#1061 prathapsridharan closed 4 months ago
1
[r] Add limits to acceptance tests in R

#1060 ebezzi closed 4 months ago
0
Is any code grammer wrong？

#1059 Hui-XiangZhang closed 5 months ago
3
[BUG] Unable to reach cellxgene servers

#1058 LysSanzMoreta closed 5 months ago
5
"Illegal Instruction" Error When Running Python Script in Docker Container

#1057 ubyndr closed 5 months ago
0
[docs] Add notebooks for scientific validation of precomputed memento implementation

#1056 prathapsridharan opened 5 months ago
0
[builder] fix test hang

#1055 bkmartinjr closed 5 months ago
0
Do scientific validation of memento estimator cube based implementation against vanilla memento

#1054 prathapsridharan opened 5 months ago
0
[misc] Prepare release 1.11.1

#1053 prathapsridharan closed 5 months ago
0
Builder tests timing out as of March 13th

#1052 ebezzi closed 5 months ago
0
[misc] Skip vignettes in r-universe builds but not docsite

#1051 ebezzi closed 5 months ago
0
[misc] Add release script

#1050 ebezzi closed 3 months ago
4
[docs] Revert bad CSS changes

#1049 ebezzi closed 5 months ago
0
get_embedding should not be obs biased

#1048 ebezzi closed 1 month ago
1
[Profiler] bumping failure threshold from 10% to 15%

#1047 beroy closed 5 months ago
1
Prepare for 1.11.0 release

#1046 ebezzi closed 5 months ago
1
[profiler] Fixing branch dependency to TileDB-SOMA

#1045 beroy closed 5 months ago
1
Test sandbox runners

#1044 beroy closed 4 months ago
3
[R] fix R dependency check workflow

#1043 ebezzi closed 5 months ago
1
Publish package release with tiledbsoma==1.8

#1042 bkmartinjr closed 5 months ago
1
Save and restore state of ExperimentDataPipe to resume iteration

#1041 mmdanziger opened 5 months ago
2
[builder] ongoing refactoring for Dask

#1040 bkmartinjr closed 5 months ago
1
census schema should document the logic for the tissue_general mapping

#1039 brianraymor opened 5 months ago
1
Update analytics with the new contrib embeddings method

#1038 ebezzi closed 3 months ago
0
Provide method to query recently added metadata in Census API

#1025 hthomas-czi opened 5 months ago
0
Provide a method for users to get a subsample of data

#1026 hthomas-czi opened 5 months ago
6
Return warnings if some method parameters are invalid or otherwise ignored

#1027 hthomas-czi opened 5 months ago
1
Return a checksum value for fetched Census data

#1028 hthomas-czi closed 3 months ago
10
Add include_cell_type_descendants convenience parameter to get_anndata()

#1029 hthomas-czi closed 2 months ago
7
Provide access to Collection metadata in Census API

#1030 hthomas-czi opened 5 months ago
0
Provide access to knowledge artifacts in Census API

#1031 hthomas-czi opened 5 months ago
16
Improve documentation for supported parameters in get_anndata() method

#1032 hthomas-czi opened 5 months ago
2
Communicate download progress to Census API users

#1033 hthomas-czi closed 2 months ago
12
Make convenience methods like get_anndata() have expressive arguments

#1034 hthomas-czi opened 5 months ago
1
Simplify column_names argument in get_anndata() method

#1035 hthomas-czi closed 1 month ago
4
Add convenience wrapper for axis_query

#1036 hthomas-czi opened 5 months ago
1
Add convenience wrapper for querying axis metadata

#1037 hthomas-czi closed 1 month ago
13
[builder] CxG schema 5 / Census schema 2

#1024 bkmartinjr closed 4 months ago
6
[python] New embeddings API

#1023 ebezzi closed 4 months ago
3
Some datasets appear to be missing from census_info in API call.

#1022 kylekimler closed 5 months ago
4
[docs] Switch R docsite to custom gh runner

#1021 ebezzi closed 5 months ago
2
[docs] misc docsite adjustments

#1020 ebezzi closed 6 months ago
0
[misc] `native cell` obsolescence (GeneFormer config)

#1019 bkmartinjr closed 4 months ago
0
[builder] update uberon and tissue_general mapping to schema 4 standard

#1018 bkmartinjr closed 6 months ago
1
[builder] wrong UBERON version

#1017 bkmartinjr closed 6 months ago
2
[misc] remove editable tiledb install

#1016 bkmartinjr closed 5 months ago
1

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