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chanzuckerberg
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cryoet-data-portal-backend
CryoET Data Portal API server & ingestion scripts
MIT License
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fix parent filters indentation
#210
daniel-ji
closed
2 weeks ago
0
feat: ingest stl, vtk, and obj mesh annotations
#209
Bento007
closed
1 week ago
0
initial setup
#208
jakeyheath
closed
2 weeks ago
0
feat: s3 data validation: annotations, frames, gains
#207
daniel-ji
closed
5 days ago
0
Schema.py refactor & bug fixes
#206
daniel-ji
closed
3 weeks ago
0
Refactoring annotation importer
#205
manasaV3
closed
3 weeks ago
0
s3 data validation: gains & frames
#204
daniel-ji
closed
3 weeks ago
0
feat: API V2 - Local dev only for now
#203
jgadling
closed
1 week ago
0
Updating annotation description
#202
manasaV3
closed
3 weeks ago
0
s3 data validation: photos & *_metadata.json sanity checks
#201
daniel-ji
closed
3 weeks ago
1
s3 data validation: annotations
#200
daniel-ji
closed
3 weeks ago
1
Adding custom tiltseries quality score
#199
manasaV3
closed
3 weeks ago
0
Updating deposition id for gas vesicle to 10308
#198
manasaV3
closed
3 weeks ago
0
Titles and descriptions for annotation depositions.
#197
uermel
closed
3 weeks ago
0
Manual deposition titles and descriptions
#196
uermel
closed
3 weeks ago
0
S3 data validation: deposition, dataset, and key_images (tomogram key photos)
#195
daniel-ji
closed
3 weeks ago
0
Bump aiohttp from 3.9.5 to 3.10.2 in /ingestion_tools
#194
dependabot[bot]
opened
4 weeks ago
0
S3 data validation annotations
#193
daniel-ji
closed
3 weeks ago
0
Adding relationship from deposition entity
#192
manasaV3
closed
3 weeks ago
0
Revert "Renaming deposition migration to more recent unix ts"
#191
manasaV3
closed
1 month ago
0
fix: Renaming deposition migration to more recent unix ts
#190
manasaV3
closed
1 month ago
0
Restructure schema folder and use separate versioning for core/, api/, and ingestion_config/ schemas
#189
daniel-ji
closed
3 weeks ago
0
Update table and column descriptions
#188
andy-sweet
closed
1 month ago
6
Updating Jensen configs to include deposition metadata
#187
manasaV3
closed
1 month ago
0
fix seed db data
#186
daniel-ji
closed
1 month ago
0
feat: Updating workflow to support deposition ingestion
#185
manasaV3
closed
1 month ago
0
chore: minor refactors
#184
manasaV3
closed
1 month ago
0
fix config validation bugs
#183
daniel-ji
closed
1 month ago
0
Update dataset-config-validate.yaml
#182
daniel-ji
closed
1 month ago
0
fix: Updating config match regex
#181
manasaV3
closed
1 month ago
0
Setup AWS S3 Data Validation
#180
daniel-ji
closed
1 month ago
0
Remove TODO statements, fix dataset_config_merge.py cmd line arg, remake docs / schema models.py with correct LinkML version
#179
daniel-ji
closed
1 month ago
0
Adding deposition support for annotations
#178
manasaV3
closed
1 month ago
0
Update gjensen dataset configs with latest fixes
#177
daniel-ji
closed
1 month ago
0
Decouple schema python scripts from ingestion_tools dependencies
#176
daniel-ji
closed
1 month ago
0
Chores: Deposition 10307
#175
uermel
opened
1 month ago
0
Full config files for deposition 10307 (Datasets 10436, 10437, 10438)
#174
uermel
closed
3 weeks ago
1
Dataset config validation: make ontology object & exclusion list checking case sensitive
#173
daniel-ji
closed
1 month ago
0
Refactor dataset config validation to support wormbase strains
#172
daniel-ji
closed
1 month ago
0
Fetch logs of enqueue_runs.py script
#171
daniel-ji
opened
1 month ago
1
fix: Segmentation mask output datatype to int
#170
manasaV3
closed
1 month ago
3
Fix setting extended header when importing MRC
#169
uermel
closed
1 month ago
0
update dataset config validation docs with poetry install requirements
#168
daniel-ji
closed
1 month ago
1
Fix ingestion / importer annotation version bug
#167
daniel-ji
closed
1 month ago
0
TomoConverter `update_headers` function throwing ValueError
#166
daniel-ji
closed
1 month ago
1
Dataset config: source placeholders, cell strain format fix, ground_truth_status / method_type fix; schema improvements
#165
daniel-ji
closed
1 month ago
0
Create validation exclusions for dataset config extended validation
#164
daniel-ji
closed
1 month ago
0
Create excludelist for dataset config extended validation
#163
daniel-ji
closed
1 month ago
0
gjensen_config.py: remove whitespace from dataset_title and dataset_description and remove null objects
#162
daniel-ji
closed
1 month ago
0
Dataset config extended validation excludelist
#161
daniel-ji
closed
1 month ago
0
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