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chapmanb
/
bcbb
Incubator for useful bioinformatics code, primarily in Python and R
http://bcbio.wordpress.com
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adding multi-core option to cufflinks
#44
kwoklab-user
closed
12 years ago
1
Tests not passing with v0.2 & messaging
#43
b97pla
closed
12 years ago
4
Feature/environment variables in config
#42
vals
closed
12 years ago
2
Project delivery templates and several fixes
#41
brainstorm
closed
12 years ago
2
Feature/float localization
#40
vals
closed
12 years ago
1
Version of GATK (for test_empty_fastq())
#39
vals
closed
12 years ago
4
110221_empty_FC12345AAXX missing on s3 bucket ?
#38
vals
closed
12 years ago
2
flybase GFF parsing error
#37
vineeth-s
closed
13 years ago
3
parsing flybase GFF
#36
vineeth-s
closed
13 years ago
5
biopython->numpy interactive (y/n) while deploying pipeline
#35
brainstorm
closed
13 years ago
14
GFFExaminer() displaying empty dict for UCSC GTF
#34
spock
closed
13 years ago
10
nextgen/bcbio/variation/realign.py
#33
kwoklab-user
closed
13 years ago
1
Preliminar input validation on samplesheet & new illumina fcid schema
#32
brainstorm
closed
13 years ago
1
_tabularize_metrics float parse error
#31
brainstorm
closed
13 years ago
2
Total variant and CalculateHsMetrics
#30
tanglingfung
closed
13 years ago
3
Pull request with latest illumina_finished_msg
#29
brainstorm
closed
13 years ago
2
Documentation + email notifications + misc fixes
#28
brainstorm
closed
13 years ago
2
barcode_sort_trim.py
#27
tanglingfung
closed
13 years ago
13
config files
#26
tanglingfung
closed
13 years ago
2
FastQC vs SolexaQA
#25
tanglingfung
closed
13 years ago
13
multipexed samples run on multiple lanes or flow cells
#24
tanglingfung
closed
13 years ago
1
Documentation + naming scheme + minor fixes
#23
brainstorm
closed
13 years ago
1
Documentation + naming scheme + minor fixes
#22
brainstorm
closed
13 years ago
3
picard_sam_to_bam.py
#21
tanglingfung
closed
13 years ago
12
doing bcl->qseq->fastq->analysis->galaxy in one machine
#20
tanglingfung
closed
13 years ago
13
No such file or directory
#19
tanglingfung
closed
13 years ago
5
0 size fastq files
#18
brainstorm
closed
13 years ago
0
env.local_install in _expand_paths() in biolinux/fabfile.py
#17
skinner
closed
13 years ago
1
Bam to wiggle tweaks2
#16
peterjc
closed
13 years ago
0
GATK vs Picard
#15
brainstorm
closed
13 years ago
2
Some more fixed on the samplesheet
#14
brainstorm
closed
13 years ago
1
Do not follow up on lanes that failed upstream (wet lab)
#13
brainstorm
closed
13 years ago
1
Fixes on samplesheet
#12
brainstorm
closed
13 years ago
1
[wish] _remote_copy() on analyze_finished_sqn.py spawns a new connection per file copy
#11
brainstorm
closed
13 years ago
1
Added Illumina/Genesifter samplesheet converter/reporter
#10
brainstorm
closed
13 years ago
0
A bit more doc needed on this function
#9
brainstorm
closed
13 years ago
1
Non-intuitive "dist" directory for bcbio/picard/__init.py__
#8
brainstorm
closed
13 years ago
1
Hotfix for hooks
#7
brainstorm
closed
13 years ago
0
Archiving deprecated, long live to the hooks
#6
brainstorm
closed
13 years ago
0
Archival basic mechanism (tar & md5)
#5
brainstorm
closed
13 years ago
0
Untitled
#4
brainstorm
closed
13 years ago
0
Untitled
#3
brainstorm
closed
13 years ago
0
First part of the pipeline running over here !
#2
brainstorm
closed
13 years ago
0
Missing GPG keys on mongodb repositories
#1
brainstorm
closed
13 years ago
1
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