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chapmanb
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bcbb
Incubator for useful bioinformatics code, primarily in Python and R
http://bcbio.wordpress.com
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A few things I noticed
#94
jwm
closed
9 years ago
1
Fix typo in mkdir command
#93
jwm
closed
9 years ago
0
tabix access to gff?
#92
danielecook
closed
9 years ago
1
Trans-spliced genes cause ValueError: Did not find remapped ID location
#91
sjackman
closed
9 years ago
5
GFFOutput.py
#90
TheOneHyer
closed
9 years ago
5
GFF parsing stopped working on system upgrade - biopython error
#89
patena
closed
10 years ago
2
parsing of GFF3 attributes fails when tag starts with a space
#88
wholtz
closed
10 years ago
1
CDS Phase not calculated by GFFOutput
#87
bobbyo
closed
9 years ago
1
over url-encoding in attribute fields
#86
bobbyo
opened
10 years ago
5
parse simple returns different start location
#85
NtBaru
closed
10 years ago
2
adaptor_trim.py
#84
radaniba
closed
10 years ago
2
BUG report
#83
Hugh-Zhu
closed
10 years ago
2
gff_to_genbank.py: sub_features is deprecated
#82
sjackman
closed
9 years ago
2
GFF code does not work in Python 3
#81
tiagoantao
closed
10 years ago
7
GFF: parse_simple fails in some cases
#80
khughitt
closed
10 years ago
1
GFFparser only keeps first line
#79
khughitt
closed
10 years ago
2
Added Python 3 support to GFF parser
#78
khughitt
closed
10 years ago
2
GFF.parser target_lines returns interchange order of contigs if contigs sorted in certain order
#77
genestack-solomatin
closed
10 years ago
1
GFFParser on python 3.3.2
#76
ychenbioinfo
closed
10 years ago
1
GFF parsing with initial sequence fails
#75
benjiec
closed
10 years ago
2
import error on Mac OS X
#74
ghost
closed
11 years ago
2
Update plink_to_vcf.py
#73
kyzhao
closed
11 years ago
1
issue compiling cortex
#72
inti
closed
10 years ago
2
Fix to sam->bam conversion step.
#71
roryk
closed
11 years ago
1
error while installing lein
#70
inti
closed
11 years ago
1
Problem installing install_biolinux
#69
inti
closed
11 years ago
2
Made memory lookup more platform independent
#68
roryk
closed
11 years ago
1
Fixes to Tophat/Bowtie2
#67
roryk
closed
11 years ago
3
Memoize refactor
#66
roryk
closed
11 years ago
4
Generic options support
#65
roryk
closed
11 years ago
1
Tophat2 support, vcf splitter by chromosome, some utilities.
#64
roryk
closed
11 years ago
1
ipython logger setup
#63
roryk
closed
11 years ago
1
Couple utilities, bed12->picard interval converter
#62
roryk
closed
11 years ago
1
Couple utilities, bed12->picard interval converter
#61
roryk
closed
11 years ago
0
Sorry for the messy multiple issue pull
#60
roryk
closed
11 years ago
1
bam_to_wiggle
#59
vineeth-s
closed
11 years ago
4
tophat fix
#58
roryk
closed
11 years ago
1
RNASeq metrics
#57
roryk
closed
11 years ago
2
Fix for localization and parsing error
#56
vals
closed
12 years ago
1
Start position in GFF
#55
srikarchamala
closed
12 years ago
4
Test suite has started taking a very long time to run
#54
vals
closed
12 years ago
4
test_2_rnaseq - Error: "Aligned record iterator [...] is behind the unmapped reads..."
#53
vals
closed
12 years ago
2
Genbank Parsing Problem?
#52
mercutio22
closed
11 years ago
7
GFF.write fails when using a single SeqRecord.
#51
mercutio22
closed
12 years ago
4
num_cores: messages; socket.timeout: timed out
#50
vals
closed
12 years ago
9
Sample id in lane
#49
percyfal
closed
12 years ago
5
merging of demuxed fastq files and project-based analyses
#48
percyfal
closed
12 years ago
11
bwa quality values
#47
percyfal
closed
12 years ago
1
Trailing Illumina 'A' and demultiplexing
#46
b97pla
closed
12 years ago
11
Test test_3_empty_fastq not passing with GATK 1.3
#45
vals
closed
12 years ago
1
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