choderalab assaytools issues

choderalab / assaytools

Modeling and Bayesian analysis of fluorescence and absorbance assays.

http://assaytools.readthedocs.org

GNU Lesser General Public License v2.1

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issues

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More Python 3 fixes

#96 jchodera closed 7 years ago
2
Bayesian outlier detection

#95 jchodera opened 7 years ago
0
[WIP] Assaytools speedup

#94 jchodera opened 7 years ago
0
LogNormalWrapper improvements

#93 jchodera closed 7 years ago
3
Unknown error/warning with Quickmodel

#92 MehtapIsik closed 7 years ago
9
Making quickmodel more flexible to accept different plate layouts

#91 MehtapIsik opened 7 years ago
4
Optimize GeneralBindingModel

#90 jchodera opened 7 years ago
19
Reproducibility plot

#89 sonyahanson closed 7 years ago
2
[WIP] Autoprotocol improvements

#88 jchodera opened 7 years ago
0
Add option to quickmodel to generate full page of traces

#87 jchodera opened 7 years ago
0
Add command-line arguments to quickmodel to allow control over number of iterations

#86 jchodera opened 7 years ago
0
Convert all strictly positive quantities to log-space for pymc2 models

#85 jchodera opened 7 years ago
1
Add LogNormalWrapper for pymc2

#84 jchodera opened 7 years ago
1
Multiple improvements to pymcmodels

#83 jchodera closed 7 years ago
46
Added parser function to make quickmodel more modular

#82 sonyahanson closed 7 years ago
2
Allow handling of [L] = 0 data.

#81 sonyahanson opened 7 years ago
0
New class to help design experiments based on assaytools MCMC data

#80 gregoryross opened 7 years ago
11
[WIP] Adding emcee to pymc sampler

#79 sonyahanson closed 7 years ago
5
Adding more experimental design with simulated data in ipynb.

#78 sonyahanson closed 7 years ago
3
Update documentation

#77 jchodera closed 7 years ago
0
Add Zenodo DOI badge; bump minor version post-release

#76 jchodera closed 7 years ago
0
0.2.0 release; minor README update

#75 jchodera closed 7 years ago
0
What units should we be using for deltaG?

#74 sonyahanson opened 7 years ago
0
Improve/unify treatment of OVERs

#73 sonyahanson opened 7 years ago
1
Clean up quickmodel

#72 sonyahanson opened 7 years ago
1
Adding quickmodel example and a new competition assay modeling notebook.

#71 sonyahanson closed 7 years ago
6
Autoprotocol example gives basically zero with huge variance delG prediction in simplest case.

#70 sonyahanson opened 8 years ago
3
Adding automated equilibration detection to delG calculation

#69 sonyahanson closed 8 years ago
19
Add quickmodel example.

#68 sonyahanson opened 8 years ago
0
Standardize XML data file names.

#67 sonyahanson opened 8 years ago
0
Cleaning `data` and `examples` directories

#66 sonyahanson closed 8 years ago
12
New pre-release

#65 bas-rustenburg opened 8 years ago
0
Why are we getting multimodal predictions for delG?

#64 sonyahanson opened 8 years ago
8
Add HSA competition assay data of 2015/10/12.

#63 MehtapIsik closed 8 years ago
1
Improving xml2png.py

#62 MehtapIsik opened 8 years ago
4
Added quickmodel.py for making figures and json files of analysis outputs.

#61 sonyahanson closed 8 years ago
6
added ability to pickle pymc model

#60 sonyahanson closed 8 years ago
2
Figure out how to get consistent delG predictions

#59 sonyahanson opened 8 years ago
10
adjusted plotting in grant.py for use in manuscript repo

#58 sonyahanson closed 8 years ago
1
Making a more general xml2png

#57 sonyahanson closed 8 years ago
4
Create storage object for analyses

#56 sonyahanson opened 8 years ago
4
Raw Data Organization

#55 sonyahanson opened 8 years ago
21
Write Tests

#54 sonyahanson opened 8 years ago
1
Added results for Lapatinib, Saracatinib and Vandetanib spectra with p38

#53 Lucelenie closed 8 years ago
0
Test out Gaussian Process for dealing with outliers

#52 sonyahanson opened 8 years ago
8
[WIP] Doing some plotting of free energy results.

#51 sonyahanson closed 8 years ago
1
Improved `read_icontrol_xml` so it can read in OVERs

#50 sonyahanson closed 8 years ago
3
[WIP] Making better analysis pipeline

#49 sonyahanson closed 8 years ago
7
[WIP] Adjusting platereader.py for spectra

#48 sonyahanson closed 8 years ago
12
added example infinite xml, D300 xml, protein, and compound stock files

#47 sonyahanson closed 8 years ago
3

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