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chollenbeck
/
rad_haplotyper
MIT License
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vcf
#40
tamsinlh
opened
1 year ago
0
cannot install
#39
rspfau
opened
2 years ago
1
Ima2 file error
#38
cbird808
opened
2 years ago
0
"Vcf" perl module changed name to VCF
#37
ericcrandall
opened
2 years ago
0
Genepop output from hexploid vcf data
#36
ARW-UBT
opened
3 years ago
0
minor clarification on activating conda
#35
pdimens
opened
4 years ago
0
Script runs but no output files
#34
baileyjc
closed
4 years ago
4
Can't find BAM file for individual: BR_002 at rad_haplotyper.pl line 1345.
#33
joswald
closed
4 years ago
0
PackagesNotFoundError: The following packages are not available from current channels: - rad_haplotyper
#32
joswald
opened
4 years ago
4
Potentially erroneous "failed" haplotyping calls
#31
cbird808
opened
4 years ago
1
Truncated names in IMA format still too long
#30
stuartwillis
opened
5 years ago
1
bampath
#29
cbird808
opened
5 years ago
0
Issue with haplotype rescues
#28
jpuritz
closed
6 years ago
1
Feature request: phased vcf
#27
SheaML
closed
1 year ago
2
Vcf module problem
#26
MPvdBurg
closed
6 years ago
8
Feat/genomic ref
#25
chollenbeck
closed
6 years ago
0
Feature request: new format
#24
zacforsman
opened
6 years ago
10
Install problems..
#23
zacforsman
closed
6 years ago
4
Feature Request 2
#22
jpuritz
closed
6 years ago
0
Fixed progress bar bug
#21
chollenbeck
closed
7 years ago
0
Added general BAM file compatibility
#20
chollenbeck
closed
7 years ago
0
Feature Request
#19
jpuritz
closed
6 years ago
1
Added advanced rescue paramter
#18
chollenbeck
closed
7 years ago
0
Updated to ima2 output
#17
chollenbeck
closed
7 years ago
0
Update version
#16
chollenbeck
closed
8 years ago
0
Fixes bug that skips SNPs at first read position
#15
chollenbeck
closed
8 years ago
0
Feat parse complex
#14
chollenbeck
closed
8 years ago
0
Added memory friendly haplotype builder
#13
chollenbeck
closed
8 years ago
0
Fixed locus and individual stats log file
#12
chollenbeck
closed
8 years ago
0
Fixed variable scoping bug causing reads to be sampled improperly
#11
chollenbeck
closed
8 years ago
0
Updated documentation in README and source
#10
chollenbeck
closed
8 years ago
0
Added export to vcf option
#9
chollenbeck
closed
8 years ago
0
Fix stats.out output
#8
jpuritz
closed
9 years ago
0
Bug/fix-warnings
#7
chollenbeck
closed
9 years ago
0
Print genepop codes
#6
chollenbeck
closed
9 years ago
0
Randomized Read Selection
#5
chollenbeck
closed
9 years ago
0
Added count filters
#4
chollenbeck
closed
9 years ago
0
Stats file update
#3
chollenbeck
closed
9 years ago
0
Bug fix/Misc Updates
#2
chollenbeck
closed
9 years ago
0
Added POD documentation
#1
chollenbeck
closed
9 years ago
0