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clingen-data-model
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clinvar-ingest-reports
ClinGen generates several google sheet based reports from the ClinVar ingested data that originates from the Broad BigQuery data.
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Add Tracker tab for Glaucoma VCEP Report
#58
dazzariti
closed
11 months ago
5
Create VCEP Trackers for newly approved VCEPs
#57
dazzariti
closed
10 months ago
3
Adding Tracking tab to VCEP reports for pilot
#55
dazzariti
closed
1 year ago
3
Update "VCEP Impact Report Nov 30 2023"
#54
dazzariti
closed
7 months ago
4
Create first production CvC dataset for ClinVar
#53
dazzariti
closed
1 year ago
0
Simons GenomeConnect VCEP Variant Tracker Updates
#52
dazzariti
opened
1 year ago
0
Gap analysis and model update for clinvar ingest v2
#51
larrybabb
closed
11 months ago
1
ClinVar ingest v2 - Somatic XML release 2023 Q4
#50
larrybabb
opened
1 year ago
1
Request to filter by clinsig
#48
dazzariti
closed
1 year ago
1
Add interlaboratory (single submitter) conflicts in ClinVar to CVC Statistics sheet
#47
dazzariti
closed
5 months ago
2
Normalize variations for VRS 2.0 using variation_identity table
#46
theferrit32
opened
1 year ago
0
Variant Tracker Project Reference documentation tasks
#45
toneillbroad
closed
1 year ago
2
Tracking tab tasks
#44
toneillbroad
closed
1 year ago
4
Add color coding to reflect recalculated Clinical Significance
#43
toneillbroad
closed
1 year ago
2
Adjust Alert for "Newer" SCVs
#38
dazzariti
closed
1 year ago
3
Highlight SCVs in VCEP Variant Tracker Alert tab with multiple Alerts
#37
dazzariti
opened
1 year ago
1
Add Countdown to Out of Date Variants
#36
dazzariti
opened
1 year ago
0
Draft technical documentation for VCEP report app scripts
#40
hdziadzio
closed
1 year ago
3
Capture QC ok/fixed flags on Breakout tabs and show on main QC report
#35
larrybabb
closed
1 year ago
5
Clinvar normalizer analysis add-on request
#34
larrybabb
closed
1 year ago
3
Data dump of ClinVar SCVs for TDrivas/UPenn Medicine Research project
#33
larrybabb
closed
1 year ago
5
ClinVar ingest service is failing on orphaned TraitMapping records
#32
larrybabb
closed
1 year ago
1
Variant Pathogenicity 2.0 Model
#31
hdziadzio
closed
1 year ago
2
VRS 2.0 Alpha Model
#30
hdziadzio
closed
1 year ago
2
Glaucoma VCEP Report does not have most recent ClinVar data
#29
dazzariti
closed
1 year ago
2
GenomeConnect historical data at time of submission
#28
larrybabb
closed
1 year ago
0
Enhance QA/QC curation sheets to show QC curation resolutions
#27
larrybabb
closed
1 year ago
1
QA/QC sheet flags not correct
#26
larrybabb
closed
1 year ago
1
CvC Statistics - Submitter Tab reports (Clin Sig flag)
#25
dazzariti
closed
1 year ago
0
Change "Out of Date" Alert in VCEP Variation Tracker
#24
dazzariti
closed
1 year ago
5
Limit CvCuration Annotations to those variants with medically significant conflicts
#23
dazzariti
closed
1 year ago
3
Create VCEP Alert/Priority Variant Tracker Reports for Approved VCEPs
#22
dazzariti
closed
1 year ago
7
Move statistics tabs from CvC Annotation sheet to CvCuration Statistics
#21
dazzariti
closed
1 year ago
1
Some VCEP gene symbols are invalid
#20
larrybabb
closed
1 year ago
1
ENIGMA Reports
#18
dazzariti
closed
1 year ago
0
add bq scripts to initialize repo
#16
larrybabb
closed
1 year ago
0
Load BQ procedures for transforming ClinVar repos into report-ready snapshots
#15
larrybabb
closed
1 year ago
1
PAH Pilot VCEP Variation Tracker Report
#14
dazzariti
closed
1 year ago
3
Document onboarding process so VCEPs can use VCEP Variation Trackers
#13
dazzariti
closed
7 months ago
4
VCEP Tracker Permissions Issue
#12
dazzariti
closed
1 year ago
1
VCEP Tracker: New tab "Resolved by CvC Curation"
#11
dazzariti
closed
8 months ago
2
VCEP Tracker: Alert and Priority Tab enhancements
#10
dazzariti
closed
1 year ago
7
Streamline ability to update "how to use" help dialogue.
#9
larrybabb
closed
1 year ago
0
Google JSON Response Exception Error when refreshing VCEP Variation Tracker
#5
dazzariti
closed
1 year ago
1
Stand up a repo for the ClinVar Google Sheet process
#3
larrybabb
opened
1 year ago
0
New Outlier Report limited to GenCC genes
#8
dazzariti
closed
1 year ago
4
Create VCEP Variation Tracker Reports for unapproved VCEPs
#19
dazzariti
closed
8 months ago
2
VCEP Variation Tracker
#41
dazzariti
closed
1 year ago
0
GenomeConnect Variation Tracker: Requested enhancements
#61
dazzariti
closed
2 months ago
2
GenomeConnect MVP Variation Tracker
#7
dazzariti
closed
8 months ago
0
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