issues
search
clinical-biomarkers
/
biomarker-partnership
CFDE Biomarker Partnership
https://hivelab.biochemistry.gwu.edu/biomarker-partnership
1
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Rfc changes
#51
seankim658
closed
7 months ago
0
Dictionary array changes
#50
seankim658
closed
7 months ago
0
V1.1 data dictionary
#49
seankim658
closed
8 months ago
0
New LinkedIN post for biomarker partnership
#48
DaniallMasood
opened
8 months ago
0
4g. Review annotation tables from other DCCs and verify
#47
DaniallMasood
opened
9 months ago
0
4g. Harmonize and integrate annotation tables with cellular biomarkers data
#46
DaniallMasood
opened
9 months ago
0
4f. Harmonize and integrate annotation tables with pathway data
#45
DaniallMasood
opened
9 months ago
0
4e. Harmonize and integrate annotation tables with metabolites and metabolite related genes
#44
DaniallMasood
opened
9 months ago
0
4d. Harmonize and integrate annotation tables with EHR patient count
#43
DaniallMasood
opened
9 months ago
0
4c. Harmonize and integrate annotation tables with drugs/small molecules
#42
DaniallMasood
opened
9 months ago
0
4b. Harmonized and integrated data tables with biomarker-disease co-mention in literature
#41
DaniallMasood
opened
9 months ago
0
4a. Provide harmonized and integrated annotation tables with biomarker entity biological function
#40
DaniallMasood
opened
9 months ago
0
formatting
#39
seankim658
closed
9 months ago
0
Rework
#38
seankim658
closed
9 months ago
0
3d. Harmonized table of biomarkers with persistent IDs with links to source IDs
#37
DaniallMasood
opened
9 months ago
0
3c. Extract biomarker data from resources decided on by the group
#36
DaniallMasood
opened
9 months ago
0
3b. Suggest different sources to extract biomarker data from
#35
DaniallMasood
opened
9 months ago
0
3a. Review automated biomarker data that has been collected from OpenTargets, MarkerDB, ClinVar, and GWAS Catalog by GlyGen
#34
DaniallMasood
opened
9 months ago
0
2b. Map extra annotations/contextual data/details to biomarkers in provided data model.
#33
DaniallMasood
opened
9 months ago
0
2a. Provide examples of biomarker annotations and provide all data to partners
#32
DaniallMasood
opened
9 months ago
0
1f. Identify what contextual data can be provided for cell biomarkers. Provide cell biomarker examples
#31
DaniallMasood
opened
9 months ago
0
1d. Identify drugs/small compounds/biological functions data that can be associated to biomarkers
#30
DaniallMasood
opened
9 months ago
0
1d. Begin to identify what contextual data and annotations form MW studies can be used in biomarker definition
#29
DaniallMasood
opened
9 months ago
0
1c. Begin to identify what kind of contextual data related to drugs/genome can be used in biomarker definition
#28
DaniallMasood
opened
9 months ago
0
1a. Draft biomarker data model/fields and share with partners.
#26
DaniallMasood
closed
3 months ago
1
Set up initial website
#25
seankim658
closed
8 months ago
1
GWAS Data Oddities
#24
seankim658
closed
3 months ago
1
Loinc code mapping
#23
seankim658
closed
9 months ago
1
Disease mapping
#22
seankim658
closed
8 months ago
2
October PI meeting
#21
DaniallMasood
closed
3 months ago
0
Milestone Distillation
#20
DaniallMasood
closed
3 months ago
0
Kickoff Meeting
#19
DaniallMasood
closed
9 months ago
0
CFDE channels/ groups
#18
DaniallMasood
closed
3 months ago
0
1b. Manual check of OncoMX biomarkers to set a gold standard of biomarkers
#17
DaniallMasood
opened
10 months ago
0
Create BiomarkerKB Webpage
#16
DaniallMasood
closed
9 months ago
0
Biomarkerkb website
#15
danlymangw
closed
3 months ago
0
Confirm best_biomarker_type
#14
danlymangw
opened
1 year ago
0
GlyGen biomarker data
#13
danlymangw
opened
1 year ago
0
Programmatic biomarker curation
#12
danlymangw
opened
1 year ago
0
Biomarker pipeline scripts
#11
danlymangw
closed
9 months ago
1
Biomarker pipeline procedures
#10
danlymangw
closed
9 months ago
1
Migrate biomarker data
#9
danlymangw
opened
1 year ago
1
Access to biomarker/data, api, and sparql
#8
danlymangw
opened
1 year ago
6
Biomarker pipeline in HIVE-Lab server
#7
danlymangw
opened
1 year ago
0
BCO ‘derive from’ button
#6
danlymangw
closed
11 months ago
0
Publish biomarker data package
#5
danlymangw
opened
1 year ago
0
BCOs for new panel and ratio biomarkers
#4
danlymangw
opened
1 year ago
1
Create URLs for biomarker panels, ratios
#3
danlymangw
opened
1 year ago
0
Update gdrive biomarker set
#2
danlymangw
opened
1 year ago
0
Example of concatenated BCOs
#1
danlymangw
opened
1 year ago
0
Previous
Next