issues
search
cmap
/
cmapPy
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
https://clue.io/cmapPy/index.html
BSD 3-Clause "New" or "Revised" License
124
stars
74
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
parse_gctx: don't sort returned values
#36
dllahr
opened
6 years ago
6
Bug for the 3.1.1 version
#35
crotoc
closed
6 years ago
1
math/fast_cov.py and math/fast_corr.py: add math routines to calculate covariance and correlation matrices (the latter uses the former)
#34
dllahr
closed
6 years ago
6
fix bug where floats where written out with maximum decimal places and data_float_parameter was ignored
#33
dllahr
closed
6 years ago
4
Following tutorial yields error
#32
tstoeger
closed
6 years ago
12
parse.py to provide exactly the same arguments to parse_gct as to parse_gctx
#31
levlitichev
closed
6 years ago
9
License in setup.py: Need to replace s/MIT/BSD/
#30
mbargull
closed
6 years ago
2
Math
#29
EvanLemire
closed
6 years ago
3
GCToo fixes
#28
levlitichev
closed
6 years ago
0
Chunking and compression
#27
oena
closed
6 years ago
0
Paths and parses
#26
dllahr
closed
6 years ago
5
pandasGEXpress tests break for python 3
#25
oena
closed
5 years ago
2
py2/3 compatible open
#24
stuppie
closed
6 years ago
2
pandasGEXpress parse fails
#23
stuppie
closed
6 years ago
2
updated dev environment info & typo fixes
#22
oena
closed
6 years ago
0
Import statement changes, bug fixes, more tests
#21
oena
closed
6 years ago
0
investigate issues with travis running tests directory
#20
oena
closed
6 years ago
1
.travis.yml: fixed TEST_DIR paths
#19
levlitichev
closed
6 years ago
3
need to convert all import statements to absolute paths
#18
oena
closed
6 years ago
1
Support Python 2.7, 3.4, 3.5, 3.6
#17
mruffalo
closed
6 years ago
4
need test for main w/in slice_gct
#16
dllahr
closed
6 years ago
1
need basic test coverage for pandasGEXpress.gctx2gct
#15
dllahr
closed
6 years ago
1
need basic test coverage for pandasGEXpress.gct2gctx
#14
dllahr
closed
6 years ago
1
need basic test coverage for pandasGEXpress.parse
#13
dllahr
closed
6 years ago
1
Upgrade pandas etc
#12
dllahr
closed
6 years ago
6
parse behaves the same regardless of whether gct or gctx is used
#11
dllahr
closed
6 years ago
1
error in 'test_genes_queries.py'
#10
FADHLyemen
closed
6 years ago
10
cmapPy breaks with pandas == 0.20
#9
oena
closed
6 years ago
1
gmt.py
#8
levlitichev
closed
6 years ago
13
Small changes to parse_gct, parse_gctx, and parse
#7
levlitichev
closed
7 years ago
1
Problems parsing gctx due to meta_only
#6
joaoreis92
closed
7 years ago
4
a number of updates/fixes
#5
oena
closed
7 years ago
0
pandasGEXpress all rid, cid default as strings in HDF5
#4
dedavison
closed
6 years ago
1
Add slice_gct as command line tool
#3
levlitichev
closed
7 years ago
1
Exception("parse_gctx check_id_validity " + msg)
#2
kai0511
closed
7 years ago
1
Wired performance in parsing gctx file
#1
pittacus
closed
7 years ago
2
Previous