cmap cmapPy issues - Githubissues

cmap / cmapPy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

https://clue.io/cmapPy/index.html

BSD 3-Clause "New" or "Revised" License

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issues

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https://clue.io/cmapPy/index.html Page not found.

#88 xtzhang-AI4S opened 3 days ago
0
`numpy.string_` -> `numpy.str_`

#87 mmp3-montai closed 2 weeks ago
0
Assertion Error occuring on "subsetting GCToo instances" part

#86 VangieY opened 5 months ago
0
Parse isnt working when trying to read in cs_sig.gtcx from query results

#85 JManickam13 opened 11 months ago
0
API Use Cases

#84 faithtyuan opened 11 months ago
0
Error in opening LINCS L1000 .gctx file

#83 songsong0425 closed 1 year ago
1
Unable to install pypi version of cmappy - no such file or directory 'pytz-2021.1.dist-info/METADATA''

#82 Zethson closed 1 year ago
2
pypi release

#81 Zethson opened 1 year ago
1
write_gct adds in the index column

#80 jnedzel opened 1 year ago
0
Python 3.11 version

#79 pauleve closed 1 year ago
0
Cannot write back GCT file that has been parsed

#78 Munchic opened 2 years ago
1
Bug .GCT written by cmapPy on Windows have inconsistent line endings

#77 KarlClauser opened 2 years ago
4
fix bug in write_gct for newest version of pandas; minor adjustments to reading writing gct/x

#76 dllahr closed 2 years ago
0
cmapPy/pandasGEXpress/transform_gctoo.py

#75 dllahr closed 3 years ago
0
Solving environment: failed

#74 antonkratz opened 3 years ago
0
cmapPy/math/fast_corr.py and fast_cov.py: update these routines so they can accept 1D arrays as inputs

#73 dllahr closed 3 years ago
0
Optimize gctx subsetting order for memory usage.

#72 darintay closed 3 years ago
0
Subsetting picks wrong dimension to subset over first

#71 darintay opened 3 years ago
1
Error in parsing

#70 DeepColin opened 3 years ago
0
'utf-8' codec Error when parsing gctx

#69 Hoa-Lab closed 3 years ago
1
GCTX parsing is not thread safe.

#68 nborunov-integral opened 3 years ago
0
Error during parsing

#67 LeskosekRok opened 3 years ago
3
CMap tutorial IPython notebook doesn't open

#66 deniseduma closed 3 years ago
3
Cmap tutorial IPython notebook doesn't open in the browser

#65 deniseduma opened 4 years ago
0
reading gctx from a non-fs file object

#64 idavydov opened 4 years ago
1
parse_gctx takes too much memory when we inquire specific columns and rows

#63 Dom303 opened 4 years ago
2
mismatch between metadata and gctx

#62 ElyasMo opened 4 years ago
0
Visualization subpackage added

#61 naviddianati closed 4 years ago
0
can not read .gctx file

#60 benanbardak closed 5 years ago
1
math.tests/fast_cov and fast_corr: added methods for calculating when nan's are present

#59 dllahr closed 5 years ago
2
Issue #36 (add sort option for parse gctx)

#58 saksham219 closed 5 years ago
0
how I create a conda environment for cmapPy and python 3

#57 ghost opened 5 years ago
1
Issue #55 numpy workaround fix

#56 saksham219 closed 5 years ago
1
pandasGEXpress.write_gctx id in gctx is null

#55 ghost closed 5 years ago
5
Python3 compatible

#54 saksham219 closed 5 years ago
8
Parsing GCT files fails in python3

#53 saksham219 closed 5 years ago
1
ValueError: array is too big; `arr.size * arr.dtype.itemsize` is larger than the maximum possible size.

#52 FarshidShekari closed 5 years ago
3
get row id in cmappy in gctx Files

#51 FarshidShekari closed 5 years ago
1
cmapPy_pandasGEXpress_tutorial.ipynb fails to parse ids

#50 maxdrohde closed 5 years ago
1
updated requests to version without security issue

#49 oena closed 6 years ago
0
write_gct capable of writing invalid GCToo objects

#48 dedavison closed 5 years ago
1
Convert .gctx file to .gct

#47 FarshidShekari closed 6 years ago
7
Fix GCT file parsing in Python 3

#46 JDRomano2 closed 6 years ago
3
drastically reduce memory requirements for math.fast_cov & math.fast_corr

#45 dllahr closed 6 years ago
1
Annotate gct/gctx files in gctx2gct and gct2gctx files

#44 AnupJonchhe closed 6 years ago
0
Exception while parsing gct files

#43 Naghipourfar closed 6 years ago
5
Significant speed up in pandasGEXpress

#42 TyberiusPrime closed 6 years ago
1
better_parse_error

#41 adofficer closed 6 years ago
1
Add annotating a gct/x as a command-line tool

#40 oena closed 6 years ago
1
code to compute connectivity score

#39 FADHLyemen opened 6 years ago
3