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coderefinery
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reproducible-research
Reproducible research - Preparing code to be usable by you and others in the future
https://coderefinery.github.io/reproducible-research/
Creative Commons Attribution 4.0 International
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Move Exercise preparation to just before the exercise
#212
MatiasJJ
closed
1 year ago
0
Lift learning outcomes from instructor guide to index page
#211
bast
closed
1 year ago
0
Meme for containers
#210
bast
closed
1 year ago
2
Snakemake exercise: simplify and offer an R tab
#209
bast
closed
1 year ago
1
Recording environments: instead of docker-hello-world exercise use cases and pros and cons
#208
bast
closed
1 year ago
2
Recording dependencies: include R example
#207
bast
closed
1 year ago
0
Lesson is coupled to https://github.com//coderefinery/documentation through the "word count" example
#206
bast
closed
1 year ago
1
Add standard CR links to bottom
#205
rkdarst
closed
1 year ago
0
content/guide: Add "field report" from 2022 september
#204
rkdarst
closed
1 year ago
1
Detailed day schedule
#203
bast
closed
1 year ago
2
Faster explanation of snakemake
#202
rkdarst
closed
1 year ago
1
Singularity -> Apptainer
#201
samumantha
closed
1 year ago
2
Singularity is now Apptainer
#200
johanhellsvik
closed
1 year ago
2
word-count environment.yaml has same name as `coderefinery` environment so can't be made
#199
rkdarst
closed
1 year ago
1
content/environments: misc updates to the page
#198
rkdarst
closed
1 year ago
0
content/workflow-management: Misc updates
#197
rkdarst
closed
1 year ago
0
content/dependencies: Small rearrangements in dependencies
#196
rkdarst
closed
1 year ago
0
content/organizing-projects: Minor updates
#195
rkdarst
closed
1 year ago
0
adding `renv` to R dep management tools list
#194
Sparrow0hawk
closed
1 year ago
2
Small updates to various text
#193
rkdarst
closed
1 year ago
0
content/index: Researcher-focused intro paragraph on the front page
#192
rkdarst
closed
1 year ago
0
Indent various code blocks
#191
rkdarst
closed
1 year ago
0
Adjust code highlighting `bash` -> `console`
#190
rkdarst
closed
1 year ago
0
explain concept of "execution graph"
#189
bast
closed
1 year ago
1
relevant xkcd
#188
bast
closed
1 year ago
0
Mention https://www.datalad.org/
#187
bast
closed
1 year ago
0
Comment on what happens with a 'standard' anaconda environment
#247
rkdarst
opened
2 years ago
2
wordcount example throws an error
#186
bast
closed
2 years ago
1
Type along introductions to Snakemake
#185
rantahar
closed
1 year ago
3
rm short section which works for make but is confusing for snakemake
#184
wikfeldt
closed
2 years ago
0
snakemake HPC optional exercise needs an update
#183
wikfeldt
closed
1 year ago
1
add optional snakemake exercise with singularity
#182
wikfeldt
closed
1 year ago
1
Remove now-unneded local style
#181
rkdarst
closed
2 years ago
0
Exercises renamed and Mamba added
#180
samumantha
closed
2 years ago
0
update exercise numbering/naming
#179
samumantha
closed
1 year ago
1
Snakemake in HPC
#178
samumantha
closed
1 year ago
3
Mamba
#177
samumantha
closed
2 years ago
1
Remove create from template from beginning; closes #175
#176
samumantha
closed
2 years ago
0
Get word-count repository from template only when needed
#175
samumantha
closed
2 years ago
3
content/exercises: Add list of exercise directive
#174
rkdarst
closed
2 years ago
0
update docker and some smaller improvements
#173
wikfeldt
closed
2 years ago
0
some further updates and closing a few issues
#172
wikfeldt
closed
2 years ago
0
closing issues and adding list of exercises
#171
wikfeldt
closed
2 years ago
0
Create a list of exercises
#170
bast
closed
2 years ago
4
convert lesson to sphinx-lesson
#169
wikfeldt
closed
2 years ago
1
Couple of interesting links
#238
bast
opened
2 years ago
0
Link to couple of resources
#168
bast
closed
2 years ago
0
list of research software registries
#167
bast
closed
2 years ago
0
Exercise about setting up own environments
#166
bast
closed
2 years ago
1
Clarify first step in snakemake exercise
#165
PatricHolmvall
closed
3 years ago
2
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