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cole-trapnell-lab
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cufflinks
Boost Software License 1.0
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Move cuffcompare temp files out of working dir in cuffmerge
#39
xrobin
closed
6 years ago
1
No instructions and Make fails
#38
Pallieguy
opened
9 years ago
1
after download master cufflinks binary files, I can not find the executable files?
#37
myRNASeq
closed
9 years ago
1
Why maximally only 57817 genes in the genes.fpkm_tracking output ?
#36
sterding
opened
9 years ago
0
Cuffnorm
#35
johanneskoester
closed
9 years ago
5
Cuffdiff 2
#34
bioinfolabmu
closed
9 years ago
1
Why does not cuffmerge create tmp_meta_asm* files in cuffmerge output directory
#33
kepbod
opened
9 years ago
0
Account for truncated empirical distribution in effective transcript length calculation
#32
BenLangmead
closed
9 years ago
0
Cufflinks should trim transcripts that extend past scaffold ends
#31
ctrapnell
opened
9 years ago
0
Random generators are using default seed
#30
BenLangmead
opened
9 years ago
2
thought you guys should be made aware of this samtools response to an issue i had
#29
kotoroshinoto
closed
9 years ago
3
Sam file of collapsed reads
#28
bioinfolabmu
closed
9 years ago
1
detects eigen3 via pkg-config
#27
wookietreiber
closed
9 years ago
0
Tolerate (ignore) reads with no Match operators in their CIGAR string
#26
smowton
closed
9 years ago
0
SAM parser doesn't filter all-insert alignments, leading to segfault
#25
ctrapnell
closed
9 years ago
1
Cuffquant "usage" information is wrong --- it's the instructions for cuffdiff instead of cuffquant
#24
alexgraehl
closed
9 years ago
4
Bug in gffread when indexing fasta files with empty lines
#23
drchriscole
closed
9 years ago
7
missing linker flag for realtime library
#22
kotoroshinoto
opened
9 years ago
0
instructions on cufflinks page for building boost are incorrect
#21
kotoroshinoto
opened
9 years ago
0
will samtools dependency change to packaged with cufflinks?
#20
kotoroshinoto
closed
9 years ago
1
release commits are not tagged
#19
kotoroshinoto
closed
9 years ago
1
Getting Started for test_data.sam file
#18
kmanalo
opened
9 years ago
0
Eigen is not found when compiling from source on Linux
#17
cyrilcros
closed
4 years ago
8
licence problem
#16
loveshack
opened
9 years ago
3
gffread (core dumped)
#15
wkpalan
closed
9 years ago
2
bam/version.hpp not found
#14
kennethphough
closed
9 years ago
3
Cufflinks/cuffdiff fails for demo data set
#13
standage
opened
9 years ago
6
Cuffnorm output unnormalized count data
#12
macmanes
closed
9 years ago
1
Bug with gffread when converting gff3 to gtf
#11
kokonech
closed
9 years ago
3
ubuntu 14.04, boost 1.55, eigen 3.2.8, error compiling cufflinks
#10
ghost
closed
9 years ago
1
Cannot find config.h.in
#9
eroberson
opened
9 years ago
3
cufflink doesn't compile with last R version
#8
sistemas-scbi
closed
9 years ago
2
Fix broken CuffCompare link in README
#7
gaborcsardi
closed
9 years ago
1
sci-biology/cufflinks-2.2.1 can't be compiled in a 64 Bit Gentoo chroot image
#6
toralf
closed
9 years ago
1
Cuffnorm crashes when used with --library-norm-method classic-fpkm
#5
ctrapnell
closed
9 years ago
1
segfault when using -g with ensembl gff3
#4
bwlang
closed
9 years ago
3
fails to compile with boost 1.56+
#3
wookietreiber
closed
9 years ago
17
Update links and fix cuffquant program name.
#2
cbrueffer
closed
9 years ago
0
Pre-github smowton patches
#1
smowton
closed
9 years ago
1
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