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cole-trapnell-lab
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cufflinks
Boost Software License 1.0
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cufflinks fails to build from source with GCC-7
#89
mestia
closed
7 years ago
3
cuffdiff lost 1st item in --use-sample-sheet
#88
wangyugui
closed
7 years ago
1
Fix building cufflinks with GCC-6
#87
Peter-Levine
closed
6 years ago
0
fix github repo url
#86
bretonics
closed
6 years ago
0
Questions about "p_id" attributes
#85
xie186
closed
7 years ago
1
Cufflinks - Waiting for 1 threads to complete. [************************ ] 99%
#84
rotheconrad
opened
7 years ago
0
Fix broken headings in Markdown files
#83
bryant1410
closed
6 years ago
0
GTF output Attribute string maximum length is "only" 255 characters
#82
b8e5n
opened
7 years ago
0
no documentation on Cufflinks FAQ's
#81
Kapeel
opened
7 years ago
0
change mkpath using boost::filesystem to avoid permission error in the parent folder
#80
guowei-he
closed
6 years ago
2
Bug with gffread when converting gff3 to gtf (cufflinks 2.2.1)
#79
Michael31416
closed
7 years ago
2
Using CuffDiff to analyze the output of StringTie
#78
boya888
opened
7 years ago
0
Cuffmerge GFF Error: duplicate/invalid 'transcript'
#77
aswarren
opened
7 years ago
13
More fixes for re-instating old EIGEN build methods
#76
jmarshall
closed
5 years ago
1
gffread crashes with core dump on gtf input having 0 as one of the coordinates
#75
plijnzaad
opened
7 years ago
0
"blind" default when no conditions replicated
#74
molecules
closed
6 years ago
0
Can not build with up to date version of lemon
#73
mestia
opened
8 years ago
0
Cufflinks is frozen at 14%
#72
RxLoutre
opened
8 years ago
2
Report issue in suggested sorting
#71
aechchiki
opened
8 years ago
0
Test data not available
#70
aechchiki
opened
8 years ago
2
Error: reconstituted expression bundle does not match GTF
#69
bsouthey
opened
8 years ago
2
Issue building Cufflinks from source
#68
shashidhar22
closed
7 years ago
4
Is there a set date for the 2.2.2 release?
#67
lucventurini
opened
8 years ago
1
Switch to htslib for Cufflinks
#66
lucventurini
opened
8 years ago
1
Building Cufflinks from source fails due to undefined reference to 'sam_read1'
#65
fa-vio
opened
8 years ago
3
Exception syntax in cuffmerge breaks the program on systems with Py3 default
#64
petercombs
opened
8 years ago
0
cannot install cufflinks 2.2.1 from source due to bamlib error
#63
ashwinkelkar
opened
8 years ago
4
Cannot build cufflinks 2.2.1 from source
#62
malteseunderdog
opened
8 years ago
3
CuffLinks 2.2.1+ Eigen3 problems to build on Ubuntu 16.04
#61
malteseunderdog
opened
8 years ago
2
Missed transcripts in cuffcompare result
#60
tianfree
opened
8 years ago
4
missing error in cuffquant when annotation is zipped
#59
aerval
opened
8 years ago
0
n-dash instead of double hyphen in web documentation
#58
dsenalik
opened
8 years ago
0
cuffquant usage has a cuffdiff option listed
#57
dsenalik
opened
8 years ago
0
Cuffdiff segfault
#56
moskalenko
opened
8 years ago
0
cuffnorm says "Error: cuffdiff requires at least 2 SAM files"
#55
yuifu
opened
8 years ago
1
Loci skipped due to high abundance not reported in skipped.gtf
#54
iris42
opened
8 years ago
0
Output directory creation can fail on lustre filesystems
#53
dtrudg
opened
8 years ago
8
Cufflinks produces very strange output when MicroRNA is annotated inside a intronic region of a gene
#52
sajvanderzeeuw
opened
8 years ago
1
Add binary download link to README
#51
khoegenauer
closed
6 years ago
0
Cufflinks with RABT Runtime
#50
bartg01
opened
8 years ago
0
A bug in cuffdiff in the version 2.2.2
#49
sethbrin
closed
8 years ago
0
pre-compiled binarys
#48
gilgale
opened
8 years ago
1
./configure fails
#47
gilgale
opened
8 years ago
0
Processed 0 loci
#46
cooketho
opened
8 years ago
0
Discrepancies between --GTF and GTF-guide runs: Isoform results disappearing with GTF-guide
#45
mpschr
opened
8 years ago
0
cufflinks throwing error while using --library-norm-method
#44
ranijames
opened
8 years ago
0
Please make some tags that correspond to your release versions
#43
xguse
closed
8 years ago
10
Cufflinks SAM format incompatibility when using STAR-aligned SAM/BAM
#42
schelhorn
opened
8 years ago
7
Add library types section to fix broken link
#41
mdshw5
closed
6 years ago
0
Follow PEP 0394 and use Python2 explicitly
#40
xrobin
closed
6 years ago
2
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