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common-workflow-lab
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wdl-cwl-translator
A translator from WDL to CWL v1.2
Apache License 2.0
26
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8
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Bump mypy from 0.990 to 0.991
#207
dependabot[bot]
closed
1 year ago
1
Bump mypy from 0.982 to 0.990
#206
dependabot[bot]
closed
1 year ago
1
Update pytest requirement from <7.2,>=6.0.2 to >=6.0.2,<7.3
#205
dependabot[bot]
closed
1 year ago
1
Bump mypy from 0.981 to 0.982
#204
dependabot[bot]
closed
1 year ago
1
Bump mypy from 0.961 to 0.971
#203
dependabot[bot]
closed
1 year ago
2
Bump mypy from 0.960 to 0.961
#202
dependabot[bot]
closed
2 years ago
1
Handle cases where the WDL workflow output contains exprs
#201
kinow
opened
2 years ago
3
'Apply' object has no attribute 'expr'
#200
admi2u
closed
4 months ago
11
Bump mypy from 0.950 to 0.960
#199
dependabot[bot]
closed
2 years ago
1
Bump mypy from 0.942 to 0.950
#198
dependabot[bot]
closed
2 years ago
1
Bump mypy from 0.941 to 0.942
#197
dependabot[bot]
closed
2 years ago
1
Use pyproject.toml, remove extra files.
#196
kinow
closed
5 months ago
3
Paper
#195
ntachukwu
opened
2 years ago
1
Bump mypy from 0.940 to 0.941
#194
dependabot[bot]
closed
2 years ago
1
Bump mypy from 0.931 to 0.940
#193
dependabot[bot]
closed
2 years ago
3
Update pytest requirement from <7.1,>=6.0.2 to >=6.0.2,<7.2
#192
dependabot[bot]
closed
2 years ago
2
WDL Workflow output expressions → synthesize additionals CWL steps
#191
mr-c
closed
4 months ago
1
set root folder for WDL imports
#190
mr-c
closed
2 years ago
1
demonstrate proper translation of static map variables
#189
mr-c
closed
2 years ago
1
improve support for struct literals
#188
mr-c
closed
2 years ago
3
Enforce that Array[Type]+ are non-empty
#187
mr-c
closed
2 years ago
1
improve handling of placeholder options
#186
mr-c
closed
2 years ago
2
Try to centralize strings parsing in get_expr_string
#185
kinow
closed
2 years ago
1
Fix quoting & Add another example of if-then-else
#184
mr-c
closed
2 years ago
2
advanced scatter: more than one in the same workflow, nested scatters, etc..
#183
mr-c
opened
2 years ago
0
document missing standard library functions
#182
mr-c
closed
2 years ago
1
implement read_lines() with a functional test
#181
mr-c
closed
2 years ago
3
JOSS Paper
#180
kinow
opened
2 years ago
1
read_{tsv,int} ; added more stdout support
#179
mr-c
closed
2 years ago
1
read_*(stdout())
#178
mr-c
closed
2 years ago
0
runtime.memory: support dynamic units ; add advice for idiomatic CWL
#177
mr-c
closed
2 years ago
1
implement range()
#176
mr-c
opened
2 years ago
0
implement read_lines
#175
mr-c
closed
2 years ago
0
improve test coverage
#174
mr-c
closed
2 years ago
1
Scatter with align and count
#173
ntachukwu
closed
2 years ago
4
tests: expand excerpts into full files & misc cleanups
#172
mr-c
closed
2 years ago
1
tests: add the GA4GH 2020 Plenary demonstration workflow
#171
mr-c
closed
2 years ago
1
basic support for flatten()
#170
mr-c
closed
2 years ago
1
synthesize follow on step if there are dependencies between outputs of the same task
#169
mr-c
opened
2 years ago
0
better error messages for malformed WDL
#168
mr-c
closed
2 years ago
6
Funcs improved
#167
ntachukwu
closed
2 years ago
1
mypy: ignore lark
#166
mr-c
closed
2 years ago
1
Refactor get_cwl_task_outputs()
#165
mr-c
closed
2 years ago
1
consolidate BWA tests
#164
mr-c
closed
2 years ago
1
start documenting usage & limitations
#163
mr-c
closed
2 years ago
1
Update pytest requirement from <6.3,>=6.0.2 to >=6.0.2,<7.1
#162
dependabot[bot]
closed
2 years ago
1
Add select_all miniwdl Stdlib function
#161
kinow
closed
2 years ago
3
support the read_boolean WDL function
#160
mr-c
closed
2 years ago
2
WDL workflow output definitions with functions
#159
mr-c
opened
2 years ago
1
nested WDL struts
#158
mr-c
opened
2 years ago
0
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