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ms2pip
MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
https://ms2pip.readthedocs.io
Apache License 2.0
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Unique indexes in pandas
#175
edunivers
closed
1 year ago
1
Bibliospec/Skyline output fails when unmodified entries are empty instead of `-`
#174
RalfG
opened
2 years ago
0
Bump tensorflow from 2.6.3 to 2.6.4
#173
dependabot[bot]
closed
2 years ago
0
NumExpr safe limit for number of threads threads
#172
JB91451
closed
1 year ago
2
Avoid scipy dependency
#171
RalfG
closed
1 year ago
1
SinglePrediction: Off-by-1 bug in conversion from ms2pip to spectrum_utils modification notation?
#170
RalfG
closed
1 year ago
0
Add `model_dir` option to set custom directory for model downloads
#169
RalfG
closed
2 years ago
0
Bump pillow from 9.0.0 to 9.0.1
#168
dependabot[bot]
closed
2 years ago
0
Improve Python API documentation
#167
RalfG
closed
2 years ago
0
fasta2speclib improvements
#166
RalfG
closed
2 years ago
0
Allow custom model directory
#165
RalfG
closed
2 years ago
0
Bump tensorflow from 2.6.1 to 2.6.3
#164
dependabot[bot]
closed
2 years ago
0
download models ahead of time
#163
Seb-Leb
closed
2 years ago
3
Fully switch to pyproject.toml?
#162
RalfG
opened
2 years ago
0
Bump tensorflow from 2.6.0 to 2.6.1
#161
dependabot[bot]
closed
2 years ago
0
Bump pillow from 8.3.2 to 9.0.0
#160
dependabot[bot]
closed
2 years ago
0
xgboost error using model 'HCD' with fasta2speclib
#159
AXXQ
closed
2 years ago
2
click v8 compatible?
#158
RalfG
closed
2 years ago
0
Feature/cid tmt model
#157
ArthurDeclercq
closed
2 years ago
0
Include python 3.9 and 3.10 in build, drop 3.6
#156
RalfG
closed
2 years ago
2
ms2pip-single-prediction does not support direct .xgboost models
#155
RalfG
closed
2 years ago
0
update download url
#154
paretje
closed
2 years ago
1
Version bump (3.8.0)
#153
RalfG
closed
2 years ago
0
Add isDecoy value to dlib output (fixes #140)
#152
RalfG
closed
2 years ago
0
Windows support
#151
RalfG
closed
2 years ago
0
Python 3.10 support
#150
RalfG
closed
2 years ago
0
Bioconda build runs out-of-memory during compilation
#149
RalfG
closed
2 years ago
2
use oldest supported numpy for build
#148
paretje
closed
2 years ago
0
Build with manylinux2014
#147
RalfG
closed
2 years ago
0
version bump to 3.7.0
#146
paretje
closed
2 years ago
0
Parse modifications on L
#145
paretje
closed
2 years ago
0
Unable to handle modifications on L
#144
RalfG
closed
2 years ago
0
when i apply the ms2pip, the error occur: No module named 'ms2pip'
#143
ningzaizia
closed
3 years ago
2
MS2PIP_Server.py removes all modified peptides
#142
JB91451
closed
2 years ago
7
Installation fails with VS14 Error D8021
#141
JB91451
closed
3 years ago
3
Set isDecoy to 0 in peptidetoprotein table in DLIB output
#140
RalfG
closed
2 years ago
0
Enable passthrough of DeepLC options in fasta2speclib
#138
RalfG
closed
2 years ago
1
Add non-tryptic peptide and immunopeptide prediction models
#137
RalfG
closed
2 years ago
0
Add command line interface to predict and plot a single peptide spectrum
#136
RalfG
closed
2 years ago
2
fasta2speclib improvements
#135
RalfG
closed
3 years ago
0
Build with Numpy 1.16.6
#134
RalfG
closed
3 years ago
0
Re-implement "split parsing modifications from applying them"
#133
RalfG
closed
1 year ago
0
add dlib output format
#132
paretje
closed
3 years ago
1
Document MS2PIP class usage
#131
RalfG
closed
2 years ago
0
Using ms2pip from within python console or script
#130
MKoesters
closed
3 years ago
4
Document supported and allowed extensions for config file
#129
RalfG
closed
3 years ago
0
Matching spectra option (-m) needs documentation
#128
RalfG
opened
3 years ago
0
Update tests, use cibuildwheel to build wheels
#127
RalfG
closed
3 years ago
0
Build wheels for Python 3.9 and 3.10
#126
RalfG
closed
2 years ago
2
More Information about the config file extension
#125
Luxxii
closed
3 years ago
1
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