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courtois-neuromod
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anat-processing-book
A notebook that describes the processing of anatomical data for the Courtois-Neuromod Project.
https://courtois-neuromod.github.io/anat-processing-book/
Creative Commons Zero v1.0 Universal
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Implementation of corpus callosum (genu/body/splenium) labeled diffusion metrics (FA/MD/RD): figures & stats
#65
mathieuboudreau
closed
1 year ago
0
Add QC exclusion
#64
mathieuboudreau
closed
2 years ago
0
Add brain diffusion plots and COVs
#63
mathieuboudreau
closed
2 years ago
0
Add initial implementation of statistics tables
#62
mathieuboudreau
closed
2 years ago
0
Add a Discussion section
#61
jcohenadad
opened
2 years ago
0
Make a results section
#60
jcohenadad
opened
2 years ago
0
Add statistics
#59
jcohenadad
opened
2 years ago
9
Fix a bug related to NaNs in metrics files
#58
mathieuboudreau
closed
2 years ago
0
Update spinal cord data release version
#57
mathieuboudreau
closed
2 years ago
0
Fix bug retrieving subject and session ints
#56
mathieuboudreau
closed
2 years ago
0
Change brain data version to new beta release version
#55
mathieuboudreau
closed
2 years ago
0
Fix bugs related to number of sessions
#54
mathieuboudreau
closed
2 years ago
0
Generalize code for variable number of subjects/sessions
#53
mathieuboudreau
closed
2 years ago
1
Separate white and gray matter for spinal cord morphometry
#52
mathieuboudreau
closed
2 years ago
0
Separate white and gray matter for spinal cord morphometry
#51
jcohenadad
closed
2 years ago
0
Add docstring documentation to classes and methods
#50
mathieuboudreau
closed
2 years ago
0
Add bibliography feature
#49
mathieuboudreau
closed
2 years ago
0
Code refactoring
#48
mathieuboudreau
closed
2 years ago
0
Refactor Spine morphometry plots
#47
mathieuboudreau
closed
2 years ago
0
Refactor brain plot
#46
mathieuboudreau
closed
2 years ago
0
Remove old plots
#45
mathieuboudreau
closed
2 years ago
0
Add diffusion processing
#44
jcohenadad
opened
2 years ago
0
V2
#43
mathieuboudreau
closed
2 years ago
1
Version 2 - Itemized plan / to-do list
#42
mathieuboudreau
closed
2 years ago
6
Automatically build notebook with Github Actions
#41
jcohenadad
closed
2 years ago
2
Remove all "mean" mentions in the legend
#40
jcohenadad
closed
2 years ago
2
Fix spine T1 figure
#39
alexfoias
closed
2 years ago
12
Spinal cord T1 values
#38
agahkarakuzu
closed
2 years ago
5
Add GitHub action for book builds
#37
agahkarakuzu
closed
3 years ago
3
Add references
#36
alexfoias
closed
2 years ago
12
Add ylabel for SC results
#35
jcohenadad
closed
3 years ago
7
Font size inconsistent
#34
jcohenadad
closed
3 years ago
1
Include all the code to generate the plots
#33
jcohenadad
closed
3 years ago
2
Mix between subjects?
#32
jcohenadad
closed
2 years ago
7
Automatically find ymin/ymax in plots
#31
jcohenadad
closed
3 years ago
9
Example notebook (brain data) plot review
#30
zelenkastiot
closed
3 years ago
7
The code to generate the figures is complex and highly-customized
#29
jcohenadad
closed
2 years ago
2
Remove duplicated notebook
#28
jcohenadad
closed
3 years ago
1
Should notebooks have the outputs?
#27
jcohenadad
closed
2 years ago
2
What is the best way to comment on .ipynb files?
#26
jcohenadad
closed
3 years ago
1
Why "-2"?
#25
jcohenadad
closed
3 years ago
3
Add T2s results to spinal cord analysis
#24
jcohenadad
closed
3 years ago
4
Add qMRI microstructure results to spinal cord analysis
#23
jcohenadad
closed
3 years ago
6
HTML in source?
#22
jcohenadad
closed
3 years ago
2
README put by mistake?
#21
jcohenadad
closed
3 years ago
5
Pandas DataFrame declared is not used to generate the plot
#20
jcohenadad
closed
3 years ago
5
How results are fetched now that `spinalcord_results/` was removed
#19
jcohenadad
closed
3 years ago
5
Instruct in README how to build locally but not in the source folder
#18
jcohenadad
closed
3 years ago
0
add comments in the _config.yml
#17
jcohenadad
closed
3 years ago
3
Binder error
#16
zelenkastiot
closed
3 years ago
3
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