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ctg-lund
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singleCellWorkflows
MIT License
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Spaceranger
#61
sima-r
closed
3 months ago
0
added create-bam false
#60
sima-r
closed
3 months ago
0
Rerunning the pipeline after a crash, it crashes on linking fastqs step then reruns the fastqc
#59
sima-r
opened
4 months ago
0
added create-bam flag
#58
sima-r
closed
4 months ago
0
send bam flag
#57
henningonsbring
closed
6 months ago
0
trace file location
#56
henningonsbring
closed
9 months ago
1
remove delivery
#55
henningonsbring
closed
9 months ago
1
fixed input
#54
henningonsbring
closed
1 year ago
0
New cellranger version 7.2.0
#53
Fattigman
closed
1 year ago
0
support for alignment
#52
henningonsbring
closed
1 year ago
0
do not sync stage runs
#51
henningonsbring
closed
1 year ago
1
stage and prod profiles
#50
henningonsbring
closed
1 year ago
1
also md5sum symlinks
#49
henningonsbring
closed
1 year ago
1
remove unecessary line
#48
henningonsbring
closed
1 year ago
1
Contributing md
#47
Fattigman
closed
1 year ago
1
pass check lib compatibility flag
#46
henningonsbring
closed
1 year ago
0
Added nextflow conf for cellranger argument
#45
Fattigman
closed
1 year ago
1
updated manifest with software versions
#44
Fattigman
closed
1 year ago
0
profiles for stage or production environment
#43
henningonsbring
closed
1 year ago
2
Add docs
#42
Fattigman
closed
1 year ago
1
Fix flex mqc yaml
#41
Fattigman
closed
1 year ago
0
Fix vdjpath
#40
Fattigman
closed
1 year ago
0
Dev
#39
Fattigman
closed
1 year ago
0
Specify to which person a delivery script will send the email to.
#38
Fattigman
closed
1 year ago
10
Add issue templates
#37
Fattigman
closed
1 year ago
1
Update issue templates
#36
Fattigman
closed
1 year ago
0
Fix count to qc
#35
Fattigman
closed
1 year ago
1
Create parse bioscience workflow
#34
Fattigman
opened
1 year ago
1
creates multiqc dir
#33
Fattigman
closed
1 year ago
0
Create main.yml
#32
Fattigman
closed
1 year ago
0
Update manifest.html for v1.3.0
#31
Fattigman
closed
1 year ago
0
Multiqc capture all lib type info from cellranger multi
#30
Fattigman
closed
1 year ago
0
Update manifest.html
#29
Fattigman
closed
1 year ago
0
Fix the mqc.yaml for count workflows
#28
Fattigman
closed
1 year ago
0
Webpack and multiqc stable for both count and multi worfklows
#27
Fattigman
closed
1 year ago
0
Hotfixes
#26
Fattigman
closed
1 year ago
0
correct headers in libraries section for sc multi
#25
Fattigman
closed
1 year ago
0
Update manifest
#24
Fattigman
closed
1 year ago
0
Bug fix, named processes have slurm executor
#23
Fattigman
closed
1 year ago
0
v1.1.1 release
#22
Fattigman
closed
1 year ago
0
scmulti-10x generates correctly formatted config csv files
#21
Fattigman
closed
1 year ago
0
Change default executor to local for smaller processes
#20
Fattigman
closed
1 year ago
0
CiteSeq samplesheet compatible with illumina v2 samplesheet
#19
Fattigman
closed
1 year ago
0
CiteSeq works on sample level
#18
Fattigman
closed
1 year ago
1
Add mqc for visium workflow
#17
Fattigman
closed
1 year ago
1
Add visium documentation
#16
Fattigman
closed
1 year ago
0
corrected path to slidefiles
#15
Fattigman
closed
1 year ago
0
pipelines outputs are correctly collected
#14
Fattigman
closed
1 year ago
0
added spacecount to process config
#13
Fattigman
closed
1 year ago
0
Add visium
#12
Fattigman
closed
1 year ago
0
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