issues
search
dchaley
/
deepcell-imaging
Tools & guidance to scale DeepCell imaging on Google Cloud Batch
8
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Only retry BQ upload on exceeding rate limits
#196
dchaley
closed
4 months ago
0
Stop infinite BQ retry loop
#195
dchaley
closed
4 months ago
0
Fixing type inference & n dimensions
#194
dchaley
closed
4 months ago
0
Replicate or move artifact repo to us-central
#193
dchaley
closed
4 months ago
1
Find way to shrink container
#192
dchaley
closed
4 months ago
10
Add bq upload retries using tenacity
#191
dchaley
closed
4 months ago
0
Add retry / backoff logic for BigQuery upload
#190
dchaley
closed
4 months ago
0
Extract the machine type portion from the qualified string
#189
dchaley
closed
4 months ago
0
Add gcp_service to csv upload
#188
dchaley
closed
4 months ago
0
Populate the gcp_service column in CSV upload
#187
dchaley
closed
4 months ago
1
Get just the machine type from metadata
#186
dchaley
closed
4 months ago
0
Output machine config in results
#185
dchaley
closed
4 months ago
0
Output is_first_run as blank not null
#184
dchaley
closed
4 months ago
0
Run benchmark on Google Batch
#183
dchaley
closed
4 months ago
6
Add method to call metadata server
#182
dchaley
closed
4 months ago
1
Generalize fast-hybrid to n-dimensional arrays
#181
dchaley
closed
5 months ago
0
Notebook to generate classification report
#180
dchaley
closed
5 months ago
0
Write notebook to generate classification report
#179
dchaley
closed
5 months ago
1
Extract 5 training data examples
#178
dchaley
closed
5 months ago
0
Select reference inputs + annotations from TissueNet training data
#177
dchaley
closed
5 months ago
0
Refactor memory views to pointers
#176
dchaley
closed
6 months ago
0
Refactor data as pointers
#175
dchaley
closed
6 months ago
0
Add forgotten library file…
#174
dchaley
closed
6 months ago
0
Default batch size 16; parameter to skip postprocessing (results unintelligible)
#173
dchaley
closed
6 months ago
0
Create benchmark that skips post-processing
#172
dchaley
closed
6 months ago
1
Treat offset as Py_ssize_t not uint8
#171
dchaley
closed
5 months ago
0
Parameterize offset in OpenCV chaos testing
#170
dchaley
closed
6 months ago
0
Parameterize footprint rows/cols
#169
dchaley
closed
6 months ago
0
Fix command to launch custom job
#168
dchaley
closed
6 months ago
0
Attempt to fetch & display project id from metadata
#167
dchaley
closed
6 months ago
0
Benchmark 1.25B pixel image
#166
dchaley
closed
6 months ago
4
Fix asymmetric footprint
#165
dchaley
closed
6 months ago
0
Specify header names correctly for BQ upload
#164
dchaley
closed
6 months ago
0
Create 1B pixel image
#163
dchaley
closed
6 months ago
2
Add readme & channels notebook for sample hbm458.nffx.729_451Mpx
#162
dchaley
closed
6 months ago
0
Create 1.5B image
#161
dchaley
closed
6 months ago
3
Improve sample data readme & add tiling process diagram
#160
dchaley
closed
6 months ago
0
Create 2B pixel image
#159
dchaley
closed
6 months ago
2
Change array name in 2.7B image
#158
dchaley
closed
4 months ago
2
Tile large image into even larger image
#157
dchaley
closed
6 months ago
3
Add debugging: gcloud auth list
#156
dchaley
closed
6 months ago
0
Fix container auth issues
#155
dchaley
closed
4 months ago
4
Test a 451M pixel image
#154
dchaley
opened
7 months ago
8
Use project name in table id
#153
dchaley
closed
7 months ago
0
Use aiplatform not aiplatform_v1
#152
dchaley
closed
7 months ago
0
Create BigQuery client with correct project
#151
dchaley
closed
7 months ago
1
Add debugging lines + full exception string
#150
dchaley
closed
7 months ago
0
Add BQ upload to script not just notebook
#149
dchaley
closed
7 months ago
0
Append benchmark result to BigQuery
#148
dchaley
closed
7 months ago
0
Fix asymmetric footprint aka non-center offset
#147
dchaley
closed
6 months ago
0
Previous
Next