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dchaley
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deepcell-imaging
Tools & guidance to scale DeepCell imaging on Google Cloud Batch
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Output to a base path, not individual files
#215
dchaley
closed
3 months ago
0
Add 3 retries for spot preemption exit code
#214
dchaley
closed
3 months ago
0
Refactor cmdline args to take base path w/ bools
#213
dchaley
closed
3 months ago
0
Retry batch tasks on spot preemption
#212
dchaley
closed
3 months ago
0
Add command-line parameters to benchmark script
#211
dchaley
closed
3 months ago
0
Copy model to us-central
#210
dchaley
closed
3 months ago
1
Do quick pass on container optimization
#209
dchaley
opened
3 months ago
4
Use smaller tf base image
#208
dchaley
closed
3 months ago
0
Update to results_batch bigquery table
#207
dchaley
closed
3 months ago
0
Set up cloud container build process
#206
dchaley
closed
3 months ago
3
Change benchmark script to upload to batch results table
#205
dchaley
closed
3 months ago
0
Investigate container streaming
#204
dchaley
opened
3 months ago
0
Reduce number of inner loops & cythonize time
#203
dchaley
closed
3 months ago
0
Change benchmark script parameters to command line options
#202
dchaley
closed
3 months ago
0
Set up GCP Batch results table
#201
dchaley
closed
3 months ago
4
Has benchmarking moved to BigQuery?
#200
lynnlangit
opened
3 months ago
0
Fix links in cost estimation worksheet
#199
lynnlangit
closed
3 months ago
2
Benchmark DeepCell on Google Batch with Production Image(s)
#198
lynnlangit
closed
4 days ago
5
Add batch job specs & switch container to central
#197
dchaley
closed
3 months ago
0
Only retry BQ upload on exceeding rate limits
#196
dchaley
closed
3 months ago
0
Stop infinite BQ retry loop
#195
dchaley
closed
3 months ago
0
Fixing type inference & n dimensions
#194
dchaley
closed
3 months ago
0
Replicate or move artifact repo to us-central
#193
dchaley
closed
3 months ago
1
Find way to shrink container
#192
dchaley
closed
3 months ago
10
Add bq upload retries using tenacity
#191
dchaley
closed
3 months ago
0
Add retry / backoff logic for BigQuery upload
#190
dchaley
closed
3 months ago
0
Extract the machine type portion from the qualified string
#189
dchaley
closed
3 months ago
0
Add gcp_service to csv upload
#188
dchaley
closed
3 months ago
0
Populate the gcp_service column in CSV upload
#187
dchaley
closed
3 months ago
1
Get just the machine type from metadata
#186
dchaley
closed
3 months ago
0
Output machine config in results
#185
dchaley
closed
4 months ago
0
Output is_first_run as blank not null
#184
dchaley
closed
4 months ago
0
Run benchmark on Google Batch
#183
dchaley
closed
3 months ago
6
Add method to call metadata server
#182
dchaley
closed
4 months ago
1
Generalize fast-hybrid to n-dimensional arrays
#181
dchaley
closed
4 months ago
0
Notebook to generate classification report
#180
dchaley
closed
4 months ago
0
Write notebook to generate classification report
#179
dchaley
closed
4 months ago
1
Extract 5 training data examples
#178
dchaley
closed
5 months ago
0
Select reference inputs + annotations from TissueNet training data
#177
dchaley
closed
4 months ago
0
Refactor memory views to pointers
#176
dchaley
closed
5 months ago
0
Refactor data as pointers
#175
dchaley
closed
5 months ago
0
Add forgotten library file…
#174
dchaley
closed
5 months ago
0
Default batch size 16; parameter to skip postprocessing (results unintelligible)
#173
dchaley
closed
5 months ago
0
Create benchmark that skips post-processing
#172
dchaley
closed
5 months ago
1
Treat offset as Py_ssize_t not uint8
#171
dchaley
closed
4 months ago
0
Parameterize offset in OpenCV chaos testing
#170
dchaley
closed
5 months ago
0
Parameterize footprint rows/cols
#169
dchaley
closed
5 months ago
0
Fix command to launch custom job
#168
dchaley
closed
5 months ago
0
Attempt to fetch & display project id from metadata
#167
dchaley
closed
5 months ago
0
Benchmark 1.25B pixel image
#166
dchaley
closed
5 months ago
4
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