issues
search
diskin-lab-chop
/
AutoGVP
19
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Bug: InterVar call with P with PVS1=1, downgrade to LP after autoPVS1 adjustment
#100
jungkim2
closed
1 year ago
5
Add gene annotation filtering, final output script
#99
rjcorb
closed
1 year ago
0
Create comprehensive AutoGVP output
#98
rjcorb
closed
1 year ago
2
wrapper script
#97
naqvia
closed
1 year ago
3
resolve discordant calls between variant_summary and submission_summary
#96
rjcorb
closed
1 year ago
0
Bug: Resolve discordant calls between clinVar variant_summary and submission_summary
#95
rjcorb
closed
1 year ago
1
issue85 bug
#94
naqvia
closed
1 year ago
2
retain all INFO fields when parsing
#93
rjcorb
closed
1 year ago
0
deleted unnecc results dir
#92
naqvia
closed
1 year ago
0
update parsing scripts to retain all info fields
#91
rjcorb
closed
1 year ago
0
Update filter vcf script with pass filter
#90
rjcorb
closed
1 year ago
0
Bug: vcf parsing not capturing all INFO fields
#89
rjcorb
closed
1 year ago
1
Bug: vcf files only be filtered by last criterion
#88
rjcorb
closed
1 year ago
1
WIP: Update Action to changed R/Rmd files
#87
jharenza
closed
1 year ago
1
update download script to pull from S3
#86
jharenza
closed
1 year ago
0
Bug: Variants without ClinVar calls are getting duplicated output
#85
jungkim2
closed
1 year ago
3
fixed filtering by checking vcf_id df
#84
naqvia
closed
1 year ago
1
Bug: when no ClinVar, final output has no information but only vcf_id
#83
jungkim2
closed
1 year ago
1
wrapper script
#82
naqvia
closed
1 year ago
1
Feature request: script to create comprehensive and abbreviated output files
#81
rjcorb
closed
1 year ago
2
Issue: Update README
#80
jharenza
closed
1 year ago
0
de-duplicate info field columns in parsing script
#79
rjcorb
closed
1 year ago
0
Issue77
#78
naqvia
closed
1 year ago
0
Bug: missing variants from VCF on final output
#77
jungkim2
closed
1 year ago
2
Bug: ClinVar classification giving wrong call
#76
jungkim2
closed
1 year ago
2
test styler action
#75
jharenza
closed
1 year ago
0
Parse VCF file so that INFO subfields are tab-separated columns
#74
rjcorb
closed
1 year ago
3
Parse vcf INFO subfields
#73
rjcorb
closed
1 year ago
0
removed variants from intervar run that got a call from submission files
#72
naqvia
closed
1 year ago
3
filter multianno,intervar,autopvs1 files for vcf variants
#71
rjcorb
closed
1 year ago
0
add issue and PR templates
#70
rjcorb
closed
1 year ago
3
further removed filtering info from comments, options, and functions
#69
naqvia
closed
1 year ago
0
Remove gnomad, variant AF and depth filtering
#68
rjcorb
closed
1 year ago
0
Modify address_ambiguous_calls() function
#67
rjcorb
closed
1 year ago
0
Add issue and PR template
#66
jharenza
closed
1 year ago
2
`out_annotations_report.abridged.tsv` located in multiple folders
#65
jharenza
closed
1 year ago
2
Unloop address_ambiguous_calls() function
#64
rjcorb
closed
1 year ago
0
Modify function to address ambiguous calls to remove loop
#63
rjcorb
closed
1 year ago
0
add multianno, intervar, autopvs1 filtering for vcf variants
#62
rjcorb
closed
1 year ago
2
Fix intervar issue
#61
naqvia
closed
1 year ago
0
Revert "Add columns to abridged output"
#60
rjcorb
closed
1 year ago
0
update multianno and intervar df sorting
#59
rjcorb
closed
1 year ago
0
Filtering script
#58
naqvia
closed
1 year ago
2
Add columns to abridged output
#57
rjcorb
closed
1 year ago
4
modified dockerfile to install bcftools
#56
naqvia
closed
1 year ago
3
Modify sorting of multianno and intervar data frames
#55
rjcorb
closed
1 year ago
0
filtering code added
#54
naqvia
closed
1 year ago
5
Refactor cavatica R script
#53
sakshamphul
closed
1 year ago
0
Add columns to summary table
#52
naqvia
closed
1 year ago
1
remove gnomad filter function
#51
naqvia
closed
1 year ago
1
Previous
Next