duncanca mosaik-aligner issues

duncanca / mosaik-aligner

Automatically exported from code.google.com/p/mosaik-aligner

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issues

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Faulty SAM output MosaikText

#37 GoogleCodeExporter closed 9 years ago
2
MosaikMerge Error 'Tags have not been implemented yet'

#36 GoogleCodeExporter opened 9 years ago
2
Feature request for "-quiet" mode

#35 GoogleCodeExporter opened 9 years ago
1
Build command gives error while converting reads file into Mosaik native format

#34 GoogleCodeExporter closed 9 years ago
2
Segmentation fault during MosaikAligner

#33 GoogleCodeExporter opened 9 years ago
2
feature request for single output file option in MosaikAssembler

#32 GoogleCodeExporter opened 9 years ago
0
MosaikTools error with ReferenceName

#31 GoogleCodeExporter closed 9 years ago
6
MosaikText (or MosaikSort) double free error

#30 GoogleCodeExporter opened 9 years ago
0
Patch for compiling 64-bit on Solaris 10 x86

#29 GoogleCodeExporter opened 9 years ago
0
MosaikAssembler: No SNPs in gigaBayes GFF when using MOSAIK 1.0.1370

#28 GoogleCodeExporter closed 9 years ago
2
MosaikBuild: malloc error when importing human reference on Mac OS X

#27 GoogleCodeExporter closed 9 years ago
4
quality score in unaligned readss in FASTQ file

#26 GoogleCodeExporter closed 9 years ago
2
MosaikJump: ERROR: Tried to store an empty hash.

#25 GoogleCodeExporter opened 9 years ago
7
erroneous/buggy NM:i:66545 values in MosaikText -bam output

#24 GoogleCodeExporter closed 9 years ago
1
Failure of source to compile in Mac OSx

#23 GoogleCodeExporter closed 9 years ago
3
Segmentation fault: kernel too old

#22 GoogleCodeExporter closed 9 years ago
1
MosaikSort - bus error

#21 GoogleCodeExporter closed 9 years ago
1
MosaikSort: Alignment models indicate that a specific 454 run might be paired-end (not mate-pair)

#20 GoogleCodeExporter opened 9 years ago
12
MosaikBuild: Cannot import the human reference with the Windows version

#19 GoogleCodeExporter opened 9 years ago
1
Wrong link to 64 bit version of 1.0.1367

#18 GoogleCodeExporter closed 9 years ago
1
seg fault in MosaikMerge/AlignmentReader.cpp

#17 GoogleCodeExporter closed 9 years ago
1
local search (-ls) bug

#16 GoogleCodeExporter closed 9 years ago
4
MosaikJump: Cannot use more than 40 GB RAM using the -mem parameter

#15 GoogleCodeExporter opened 9 years ago
1
Color space conversion problem

#14 GoogleCodeExporter opened 9 years ago
2
miscounted uniqueness stat

#13 GoogleCodeExporter closed 9 years ago
1
Patch for compiling on FreeBSD

#12 GoogleCodeExporter closed 9 years ago
2
MosaikAssembler: Tried to read XX bytes, but received only XX bytes

#11 GoogleCodeExporter opened 9 years ago
1
MosaikAssembler produces error

#10 GoogleCodeExporter closed 9 years ago
3
Resynchronization colorspace support failed -- premature termination of MosaikBuild when EOF is reached in one of the colorfasta mate tag files

#9 GoogleCodeExporter opened 9 years ago
3
Exact match not reported in MosaikAlign: failed hash

#8 GoogleCodeExporter opened 9 years ago
5
MosaikSort and MosaikText didn't work while mapping an illumina sequencing dataset against human chromosome

#7 GoogleCodeExporter closed 9 years ago
2
References with more than one sequence fail

#6 GoogleCodeExporter closed 9 years ago
1
MosaikSort segmentation faults during "serialize alignments" phase

#5 GoogleCodeExporter closed 9 years ago
8
No such table: Fragments when using MosaikSort and duplicate removal

#4 GoogleCodeExporter closed 9 years ago
9
MosaikAssembler: An attempt was made to get reads from an alignment archive that hasn't been opened yet.

#3 GoogleCodeExporter closed 9 years ago
13
ERROR: Unknown combination found when converting to basespace: [M] & [T]

#2 GoogleCodeExporter opened 9 years ago
9
FATAL: Kernel too old

#1 GoogleCodeExporter closed 9 years ago
6